Team:Mingdao/Contribution

iGEM 2021: Mingdao

CONTRIBUTION

Collection
Improvement

CHARACTERIZATION OF AN EXISTING BIOBRICK PART

Part: BBa_K3376000 (S. mutans lactate dehydrogenase promoter)

In our project, we want to create phage reporter to detect pathogen through phages’ specific recognition. Therefore, we need a universal promoter to drive the reporter genes in different bacteria as many as possible. We chose the S. mutans lactate dehydrogenase promoter (ldhp) which activity was demonstrated in E. coli in our iGEM 2020 project and in many Gram-positive bacteria in research papers. The ldhp promoters were assembled on pTol2 plasmid backbone (BBa_K3728002) with GFP (BBa_K3728005), RFP (BBa_K3728006) genes followed by a double terminator. The standard BBa_J04450 (lac promoter-driven RFP Coding Device) (BBa_K3728003) was also assembled on pTol2 vector as a control. The ldhp promoter activities were characterized by In vitro transcription-translation (TXTL) assay, compared to lac promoter (lacp), and in Salmonella typhimurium strain LT2 (our phage typing target).

Characterization I – TXTL assay

In vitro transcription-translation (TXTL) approach benefits synthetic biology in cell-free system 1,2. We used it to characterize promoter activity in vitro and to drive phage machinery to package its own genome. The data in Fig. 1 showed ldhp promoter can drive high GFP expression in TXTL prepared using E. coli Rosetta 2(DE3) strains as bacterial lysates.

Fig. 1. GFP fluorescence intensities were detected in TXTL and measured at Ex/Em=488/530nm for KanR/pTol2 [BBa_K3728004] (Control) and ldhp-GFP-Tr/pTol [BBa_K3728005].

Characterization II – compared to Lac promoter

As expected, Fig. 2 represented high RFP intensities of ldhp-RFP in TXTL. And the activity of ldhp was much stronger than that of lacp because E. coli Rosetta 2 (DE3)-based TXTL system contains lac repressor negatively controlling lac promoter3. The enhanced promoter activities were detected in the transformed E. coli DH5alpha with the same plasmids, where lacp was much higher than ldhp (Fig. 3).

Fig. 2. RFP fluorescence intensities were detected in TXTL and measured at Ex/Em=586/611nm for KanR/pTol2 (Control) [BBa_K3728004], ldhp-RFP-Tr/pTol2 [BBa_K3728006] and J04450/pTol2 (lacp-RFP) [BBa_K3728003]

Fig. 3. RFP fluorescence intensities at Ex/Em=586/611nm were detected in the transformed E. coli with the plasmids of KanR/pTol2 (Control) [BBa_K3728004], ldhp-RFP-Tr/pTol2 [BBa_K3728006] and J04450/pTol2 (lacp-RFP) [BBa_K3728003]. The inset photos were pictured under visible light.

Characterization III – expression in Salmonella Typhi

ldhp-RFP was assembled on pBR322-based pSB6C1 (BBa_K3728013). The resulting vector is able to transform Salmonella Typhi with the appearance of red colonies on LB agar plate with 25 μg/mL of chloramphenicol (Fig. 4), showing the ldhp activity in the Gram-negative Salmonella cells.


Fig. 4. Red colonies of the transformed Salmonella Typhi with ldhp-RFP/pSB6C1 [BBa_K3728013] plasmid formed on a Cm LB agar plate.


SCREENSHOT ON THE PART REGISTRY MAIN PAGE

GO TO Part: BBa_K3376000 FOR A CHECK


REFERENCE

1. Garenne D, Noireaux V. Cell-free transcription-translation: engineering biology from the nanometer to the millimeter scale. Curr Opin Biotechnol. 2019 Aug;58:19-27. doi: 10.1016/j.copbio.2018.10.007.

2. Rustad M, Eastlund A, Marshall R, Jardine P, Noireaux V. Synthesis of Infectious Bacteriophages in an E. coli-based Cell-free Expression System. J Vis Exp. 2017 Aug 17;(126):56144. doi: 10.3791/56144.

3. Rosetta™ 2(DE3)pLacI Competent Cells – Novagen (Sigma-Aldrich)