Difference between revisions of "Team:HUST-China/Human Practices 02"

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which also brings unprecedented challenges to our design and implementation plan. In the process of formulating specific plans, we always maintain close communication with scientists, entrepreneurs and practitioners, and listen to their stories, experiences and methods carefully. Finally, combined with their opinions, we conducted extensive discussions and formulated thorough project and specific implementation plans.Mr. Tony project is a large and systematic project of perming and dyeing, which also brings unprecedented challenges to our design and implementation plan. In the process of formulating specific plans, we always maintain close communication with scientists, entrepreneurs and practitioners, and listen to their stories, experiences and methods carefully. Finally, combined with their opinions, we conducted extensive discussions and formulated thorough project and specific implementation plans.</p><h1>1 Professors and scientists</h1><p>We have extensively visited many professors in various fields, and their opinions have played a vital role in our program formulation and problem improvement.</p><h2>1.1 Xinhua Feng</h2><div class="image"><img alt="Xinhua Feng " src="https://static.igem.org/mediawiki/2021/5/50/T--HUST-China--img--humanpractice--HP-2.1.1.1.jpg" style="width: 50%"/><p>Figure 1: Xinhua Feng</p></div><p>Professor Xinhua Feng is a member of the China Protein Professional Committee and he has a series of important research achievement in the fields of signal conduction and protein modification. During the experimental design phase, we consulted him how to assemble the PepACS peptide chain and achieve its extracellular expression and detection.</p><div class="modal-btn"><button class="btn btn-warning pull-right" data-target="#Feng-Xinhua" data-toggle="modal" type="button">Read More</button><div aria-hidden="true" aria-labelledby="Feng-XinhuaLabel" class="modal fade" data-backdrop="static" data-keyboard="false" id="Feng-Xinhua" tabindex="-1"><div class="modal-dialog modal-dialog-scrollable modal-dialog-centered modal-xl"><div class="modal-content"><div class="modal-header"><h5 class="modal-title" id="Feng-XinhuaLabel">Feng-Xinhua</h5></div><div class="modal-body"><p>Q: Our reductive peptides PepA, PepC and SPB for perming are short and we want to combine them into a chain because we are concerned that it is difficult to express them. Is this feasible and will it interfere with the effect of a single short peptide?</p><p>A: Professor Feng believes that short peptides of that length can be expressed in extracellular successfully, they just can not be detected easily. He said that when not combining, they would more likely expression without being modified. On the other hand??that combined expressions may affect the nature of each unit. The uncertainty of heterogenous expression is high, and Professor Feng also encourages us to validate the conjecture in the experiments ourselves.</p><p>After listening to Professor Feng's suggestion, we carried out a dry experiment to test different kinds of combination??and selected the combination with the highest redox potential. Then we used that one to do our wet experiments.</p></div><div class="modal-footer"><button class="btn btn-danger" data-dismiss="modal" type="button">Close</button></div></div></div></div></div><h2>1.2 Dabiao Liu</h2><div class="image"><img alt="Dabiao Liu " src="https://static.igem.org/mediawiki/2021/f/fb/T--HUST-China--img--humanpractice--HP-2.1.2.jpg" style="width: 50%"/><p>Figure 2: Dabiao Liu</p></div><p>Associate Professor Dabiao Liu is a professor of micro and nanomechanics in Huazhong University of Science and Technology. When we first measured the mechanical properties of hair, we used a tensometer in the laboratory, and found that our experimental method might be problematic. Therefore, we visited Associate Professor Dabiao Liu who was engaged in micro and nanomechanics measurement. He suggested that we use Young ' s modulus, stress limit and tensile limit length as mechanical indexes to measure the degree of hair damage after perming and dyeing. At the same time, he suggested that we use stress relaxation as a mechanical index to measure the curling maintenance ability of hair after perming and dyeing. He allowed us to borrow the micro-tensile / micro-torsional mechanical testing instrument and three-dimensional depth of field microscope in his laboratory. Under the guidance of his graduate students, we tested the mechanical properties of hair and obtained quantitative experimental results.</p><div class="modal-btn"><button class="btn btn-warning pull-right" data-target="#Liu-Dabiao" data-toggle="modal" type="button">Read More</button><div aria-hidden="true" aria-labelledby="Liu-DabiaoLabel" class="modal fade" data-backdrop="static" data-keyboard="false" id="Liu-Dabiao" tabindex="-1"><div class="modal-dialog modal-dialog-scrollable modal-dialog-centered modal-xl"><div class="modal-content"><div class="modal-header"><h5 class="modal-title" id="Liu-DabiaoLabel">Liu-Dabiao</h5></div><div class="modal-body"><p>We met with Associate Professor Dabiao Liu in his laboratory after contacting him. We told him about our purpose of measuring the mechanical properties of hair before and after perming and dyeing, and described the methods we currently used and the unsatisfactory experimental results. He said the maximum tension obtained by hair was greatly influenced by hair diameter, so tension was not the best indicator to measure the mechanical properties of hair. Subsequently, he said that to understand the damage degree of hair after perming and dyeing, the essence was to explore the mechanical strength change of hair material after perming and dyeing. Therefore, on the basis of measuring the maximum tension, the Young's modulus and stress limit can be obtained by dividing the diameter of hair to obtain the mechanical strength of hair material. After we showed our hair samples, he said his lab had equipment to measure the parameters needed to calculate Young ' s modulus. After several attempts, we determined that using Professor Liu ' s equipment to measure the Young ' s modulus / stress limit of hair is feasible.</p><p>When it comes to measuring the curling maintenance ability of permed hair, he thought that we can solve this problem by measuring the stress relaxation of hair. He said that the hair could return to the original curl state after being subjected to a certain force. The essence was that the hair still had a certain elasticity, and it could return to the original state after elastic deformation under the force. When the force on the hair increases to a certain extent, the elastic deformation part of the hair decreases, the plastic deformation part increases, and the curl of the hair cannot be maintained. At this time, the hair will slide slowly along the external force, which can be used as a parameter to calculate the stress relaxation. The micro-tensile / micro-torsional mechanical testing instrument in Professor Liu ' s laboratory can measure stress relaxation. Then, with the help of Professor Liu ' s graduate students, we completed the processing of hair samples and the measurement of hair parameters.</p></div><div class="modal-footer"><button class="btn btn-danger" data-dismiss="modal" type="button">Close</button></div></div></div></div></div><h2>1.3 Maoteng Li</h2><div class="image"><img alt="Maoteng Li " src="https://static.igem.org/mediawiki/2021/2/29/T--HUST-China--img--humanpractice--HP-2.1.3.jpg" style="width: 50%"/><p>Figure 3: Maoteng Li</p></div><p>Professor Maoteng Li is engaged in botany, genetics and other research. In vica-micronucleus test we found that the micronucleus rate of indigo group was less than the negative control group. Therefore, we consulted Professor Li Maoteng who studied botany. Professor Li believed that the high concentration of solution may inhibit the division of cells in the dividing zone, and the existing experimental results alone cannot explain the safety of indigo. Therefore, we took Li teacher ' s proposal to experiment the lower concentration of indigo dye, and got a more convincing conclusion.</p><div class="modal-btn"><button class="btn btn-warning pull-right" data-target="#Li-Maoteng" data-toggle="modal" type="button">Read More</button><div aria-hidden="true" aria-labelledby="Li-MaotengLabel" class="modal fade" data-backdrop="static" data-keyboard="false" id="Li-Maoteng" tabindex="-1"><div class="modal-dialog modal-dialog-scrollable modal-dialog-centered modal-xl"><div class="modal-content"><div class="modal-header"><h5 class="modal-title" id="Li-MaotengLabel">Li-Maoteng</h5></div><div class="modal-body"><p>When we completed the analysis results of micronucleus test in vica-micronucleus test, we found that with the increase of concentration, the micronucleus first increased and then decreased, but the data in indigo group did not show this trend, and the micronucleus rates were lower than those in the negative control group. After reviewing our experimental results, Professor Li said that although the micronucleus rate of some groups was higher than the harmful standard, compared with the chemical hair dyes purchased on the market, our natural hair dyes had obviously lower micronucleus rate, indicating that our products had a great advantage in safety and recognized the practicability of our products. In view of our doubts about the indigo group data, Li said that combined with the experimental phenomenon that the micronucleus first increased and then decreased with the increase of concentration, it could be speculated that high concentration ( or high toxicity ) treatment may directly inhibit the division of root tip meristemac zone cells. When the number of divided cells decreases, the number of micronucleus that can be observed will naturally decrease. So the result that overall indigo group less than the negative control does not fully explain the safety of indigo. With the suggestion of Professor Li, we reduced the concentration of indigo. The results showed that the micronucleus rate of root tip treated with low concentration of indigo solution increased, higher than the negative control group, but still less than the same concentration of chemical hair dye group, which proved the safety of our products more effectively.</p></div><div class="modal-footer"><button class="btn btn-danger" data-dismiss="modal" type="button">Close</button></div></div></div></div></div><h2>1.4 Tie Ke</h2><div class="image"><img alt="Tie Ke " src="https://static.igem.org/mediawiki/2021/f/f1/T--HUST-China--img--humanpractice--HP-2.1.4.jpg" style="width: 50%"/><p>Figure 4: Tie Ke</p></div><p>Associate Professor Tie Ke is engaged in genetic research. After we finished the vica-micronucleus test, there were many questions about the analysis of experimental data and the reliability of the conclusion. Therefore, we consulted Associate Professor Tie Ke who studied genetics. Mr. Ke acknowledged our results, but also pointed out that abnormal data of indigo group, suggested that we should further experiment. In addition, Professor Ke was very interested in our developed algorithm for counting cell micronucleus, and expressed his willingness to use this tool in the subsequent teaching of this experiment.</p><div class="modal-btn"><button class="btn btn-warning pull-right" data-target="#Ke-Tie" data-toggle="modal" type="button">Read More</button><div aria-hidden="true" aria-labelledby="Ke-TieLabel" class="modal fade" data-backdrop="static" data-keyboard="false" id="Ke-Tie" tabindex="-1"><div class="modal-dialog modal-dialog-scrollable modal-dialog-centered modal-xl"><div class="modal-content"><div class="modal-header"><h5 class="modal-title" id="Ke-TieLabel">Ke-Tie</h5></div><div class="modal-body"><p>Professor Tie Ke is not only a scholar in the field of genetics, but also undertakes the teaching work of genetics experiments. The vica-micronucleus test is one of his teaching contents, so he is more familiar with the content of this experiment. We gave him a detailed description of our experiments and showed our results. Professor Ke said that from the ratio of our positive control to negative control, our data were very reasonable, so the data of the experimental group also had credibility, and the significant difference between our dye paste and chemical dye paste could also explain the characteristics of our dye paste safety and health. At the same time, he also pointed out that the index of micronucleus of vicia faba root tips may be affected by many factors. The data with large deviation should not be discarded directly, but should be carefully analyzed and controlled as far as possible. With his suggestion, we carried out further experiments, explored more concentration gradients, and paid attention to controlling the consistency of the dissolution of the dye paste. More reasonable experimental data were obtained to prove the safety of our dye paste. In addition, in this experiment, each root tip needs to count at least 1000 cells under the microscope to ensure the accuracy of the experimental results. Mr. Ke said it used to be manual counting, with heavy workload and uncontrollable errors. We use image recognition technology to develop a counting micronucleus algorithm, which greatly improves the experimental efficiency. Mr. Ke said he recognized our innovation, and is willing to promote this new method in the next experimental teaching, the results of our practice.</p></div><div class="modal-footer"><button class="btn btn-danger" data-dismiss="modal" type="button">Close</button></div></div></div></div></div><h2>1.5 Jiangyun Wang</h2><div class="image"><img alt="Jiangyun Wang " src="https://static.igem.org/mediawiki/2021/3/3c/T--HUST-China--img--humanpractice--HP-2.1.5.jpg" style="width: 50%"/><p>Figure 5: Jiangyun Wang</p></div><p>Wang Jiangyun Research Group is engaged in new methods of protein and RNA labeling. We communicated with Wang Jiangyun researcher and Liu Xiaohong researcher in the same group, and discussed the selection of quantum dot labeling elements. Finally, 5-carboxyfluorescein was chosen.</p><div class="modal-btn"><button class="btn btn-warning pull-right" data-target="#Wang-Jiangyun" data-toggle="modal" type="button">Read More</button><div aria-hidden="true" aria-labelledby="Wang-JiangyunLabel" class="modal fade" data-backdrop="static" data-keyboard="false" id="Wang-Jiangyun" tabindex="-1"><div class="modal-dialog modal-dialog-scrollable modal-dialog-centered modal-xl"><div class="modal-content"><div class="modal-header"><h5 class="modal-title" id="Wang-JiangyunLabel">Wang-Jiangyun</h5></div><div class="modal-body"><p>We expect to connect short peptide PepACS with quantum dots to determine the absorption of short peptide by hair. It was found that connecting quantum dots may affect the redox potential of peptide chains and further affect the effect of perm and dye. Therefore, the PepACS after connecting quantum dots is better only used to detect absorption, and no longer used to explore the changes of hair curl and mechanical properties.</p><p>For multiple considerations, the label element was changed to 5 - carboxyfluorescein. Because we will use different bleached hair ( different melanin content ) in the experiment, we fear that due to the masking effect of melanin we will introduce irrelevant variables. We asked Mr. Wang again and he believed that melanin in hair would not cover the fluorescence intensity.</p></div><div class="modal-footer"><button class="btn btn-danger" data-dismiss="modal" type="button">Close</button></div></div></div></div></div><h2>1.6 Jun Hu</h2><div class="image"><img alt="Jun Hu " src="https://static.igem.org/mediawiki/2021/d/db/T--HUST-China--img--humanpractice--HP-2.1.6.jpg" style="width: 50%"/><p>Figure 6: Jun Hu</p></div><p>Associate Professor Jun Hu is engaged in the research of nanomaterials. In the process of the communication with Associate Professor Jun Hu, we consulted the relevant information of quantum dots, which provided great help for the absorption verification experiment of short peptides. The team eventually decided to use common fluorescent molecules 5-carboxyfluorescein for experiments.</p><div class="modal-btn"><button class="btn btn-warning pull-right" data-target="#Hu-Jun" data-toggle="modal" type="button">Read More</button><div aria-hidden="true" aria-labelledby="Hu-JunLabel" class="modal fade" data-backdrop="static" data-keyboard="false" id="Hu-Jun" tabindex="-1"><div class="modal-dialog modal-dialog-scrollable modal-dialog-centered modal-xl"><div class="modal-content"><div class="modal-header"><h5 class="modal-title" id="Hu-JunLabel">Hu-Jun</h5></div><div class="modal-body"><p>We first explained the design idea of Mr. Tony project to Associate Professor Hu Jun, and proposed that short peptides were coupled with quantum dots by EDC / NHS method, and then the hair reacted with short peptides. Finally, the absorption of short peptides by hair was observed by fluorescence microscope. Associate Professor Hu pointed out that ( 1 ) purification methods need to be considered after the completion of chemical coupling. It is suggested that ultrafiltration tube is more convenient. ( 2 ) Quantum dots are too large compared with short peptides with 42 amino acids, which may affect the function of short peptides. ( 3 ) The preparation method of quantum dots is too complex, which requires a long time for undergraduates to master. It is suggested that commercial quantum dots should be purchased directly for experiments.</p><p>By communicating with Mr. Hu, the team eventually decided to use the common fluorescent molecule 5-carboxyfluorescein for experiments. The molecular weight of 5-carboxyfluorescein is small and does not affect the function of short peptides after coupling.</p></div><div class="modal-footer"><button class="btn btn-danger" data-dismiss="modal" type="button">Close</button></div></div></div></div></div><h2>1.7 Xiao Yi</h2><div class="image"><img alt=" Xiao Yi" src="https://static.igem.org/mediawiki/2021/d/df/T--HUST-China--img--humanpractice--HP-2.1.7.jpg" style="width: 50%"/><p>Figure 7: Xiao Yi</p></div><p>Dr. Xiao Yi is a researcher of Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, who has been engaged in the field of synthetic biology for a long time. Through the communication with Dr. Xiao Yi, the team members are more clear about the experimental ideas and development prospects of synthetic biology, and also obtained the relevant experience of rapid expression of target proteins in the laboratory. In addition, Dr Xiao Yi provides suggestions for the experimental design of our pathway and heterologous yeast chassis expression.</p><h1>2 Enterprises and practitioners</h1><p>The goal of our project is to produce a truly important product. We deeply realize that there is a huge gap between theoretical experiments and industrial applications. In order to shorten the difference between production, education and research as far as possible, we strengthen the close ties with enterprises from the beginning of the project implementation plan, and put their valuable opinions into the process of project progress.</p><h2>2.1 Yantai Forestry Textile Printing and Dyeing Company Ltd</h2><div class="image"><img alt="Yantai Forestry Textile Printing and Dyeing Company Ltd" src="https://static.igem.org/mediawiki/2021/b/b6/T--HUST-China--img--humanpractice--HP-2.2.1.png" style="width: 50%"/><p>Figure 8: Yantai Forestry Textile Printing and Dyeing Company Ltd</p></div><p>Yantai Forestry Textile Printing and Dyeing Company Ltd is a private enterprise which independently develops plant dyes to print and dye textiles. Its plant dye products also win many awards. In order to understand the coloring of plant dyes and to explore better mordant conditions, we visited Li Wei, the technical director of the company. The team members learned that the company had made many important breakthrough scientific and technological achievements in the field of plant dyes, understood the importance of the development of science and technology to the emerging environmental protection industry, and also clarified the major advantages of plant dyes in environmental protection. Director Li also provided advice on the selection of our mordant. Finally, combined with their professional knowledge and the technical experience of the company, the team members discussed about dye development prospects. The company ' s manager also expressed confidence and expectations for our project prospects and downstream applications.</p><h2>2.2 Lianchuan Biology</h2><div class="image"><img alt="Lianchuan Biology" src="https://static.igem.org/mediawiki/2021/a/a3/T--HUST-China--img--humanpractice--HP-2.2.2.jpg" style="width: 50%"/><p>Figure 9: Lianchuan Biology</p></div><p>Team leaders Changxin Fan and Jiacheng Shi interviewed Feiran Han, the technical director of Lianchuan Biology, communicated with them about the understanding of synthetic biology and our project design. Director Han pointed out that synthetic biology is now a rapidly developing field. Synthetic biology can be used for research in the upper, middle and lower reaches of biological fields such as basic research, technological development and industrial application. Its core idea is the idea of design and redesign and engineering systematization. With these thoughts, Director Han put forward his own opinions on our project : our project conformed to the standardization of synthetic biology in the construction process and it was also the embodiment of systematic thinking. But there was a lack of some engineering ideas in it. He pointed out that on the one hand, we could integrate multiple functions that we want to achieve; on the other hand, we could add logic gates in it so that more functions could be achieved through regulation in a smaller system, and it is easier to achieve quantitative regulation of each function. Based on the proposal of Director Han, we integrate the two devices of dyeing and fading, and use two different promoters to regulate them, so that the other part is closed when one part works.</p><h2>2.3 Nine-source gene</h2><div class="image"><img alt="Nine-source gene" src="https://static.igem.org/mediawiki/2021/f/fa/T--HUST-China--img--humanpractice--HP-2.2.3.jpg" style="width: 50%"/><p>Figure 10: Nine-source gene</p></div><p>Team leader Changxin Fan and Jiacheng Shi had a discussion with Feihu Xu, the head of Jiuyuan Gene Development Department. Both of them discussed the characteristics of various chassis for synthetic biology applications, especially for Pichia pastoris GS115. Director Xu has a wealth of experience in heterologous expression using yeast as a chassis organism. He pointed out that signal peptides played a very important role in heterologous extracellular expression using the eukaryotic system, while signal peptides from different sources and different structures are different. Some signal peptides may not secrete a certain protein, but another signal peptide or protein can be synthesized and secreted in large quantities. Eukaryotic system expression is a very complex process, the transformation, screening, replication, transcription, translation, folding, transportation and other processes all need to be considered and optimized. Based on the suggestions of Director Xu, we chose the α-factor operon with commonly used signal peptide for extracellular expression, and the operon without signal peptide for intracellular expression. All components were expressed in both intracellular and extracellular ways and we should verify which expression is more appropriate.</p><h2>2.4 Barbershop</h2><div class="image"><img alt="Barbershop" src="https://static.igem.org/mediawiki/2021/4/41/T--HUST-China--img--humanpractice--HP-2.2.4.jpg" style="width: 50%"/><p>Figure 11: Barbershop</p></div><p>In the preliminary experiment of the project, we found that with temperature and other conditions the coloring effect of chemical dyes and plant dyes fluctuated greatly. In order to find a solution, iGEM HUST-China team members visited a private barbershop in Wuhan, Hubei Province. During the conversation with the manager, we learned that in the practical application process, hair dye does not act solely on hair, and the coloring effect itself is closely related to temperature and oxidant content. The manager also recommended some tentative plans for perming and dyeing hair. In addition, we have learned that the low prevalence of plant hair dyes is mainly due to their relatively high prices and poor color fixation effect. The barber 's manager also revealed expectations that technology could help improve products.</p><h1>3 Our design</h1><p>After a series of visits and consultations, we finally confirmed Mr. Tony ' s overall project plan combined with the suggestions of scientists and professors.</p><p>Mr. Tony project combines promoter, signal peptide, gene encoding protein, terminator and other parts to form a device that can express a certain kind of protein, and then combines functional related devices to form a system. We use molecular biology and microbiotechnology to construct the system, which can express some enzymes to synthesize a kind of pigment or short peptide to perm, and express other enzymes to degrade a kind of pigment or straighten the hair. We then transfer the constructed three systems into three engineering yeasts using Pichia pastoris GS115 as the chassis strain. Through this way, when glycerol is used as carbon source, engineering yeast could express short peptides that can make hair curls and enzymes that can synthesize pigments. These enzymes could synthesize three kinds of pigments respectively with the added components in the system as substrates. When xylose is used as carbon source, engineering yeast could express short peptides used to straighten hair and enzymes that degrade pigments, using three pigments as substrates, respectively. After the fermentation of engineering yeast, the pigments, decolorizing enzymes and short peptides are separated and extracted. We carry out a series of experiments with the extracts to determine the optimal working environment of the project and compare the advantages and disadvantages of traditional chemical perm and dye and biological perm and dye in this project.</p><div class="row g-0"><div class="col-4 girl"><img src="https://static.igem.org/mediawiki/2021/2/28/T--HUST-China--img--girl.png"/></div><div class="col-5"><div class="dialogbox"><p>I'm so impressed!!! Thank you for reminding me that the process of developing a plan also needs to be accompanied by communication and practice!! I'm even more curious about your third part: <a href="https://2021.igem.org/Team:HUST-China/Human_Practices_02/Collaboration">Project development and assessment</a>!</p></div></div></div></article></div></div></div></main><footer><div class="container"><div class="row"><div class="col-7"><div class="row justify-content-center"><div class="footer-logo"></div></div><p><span>CONTACT US: </span><a href="mailto:iGEMHUSTChina@163.com">iGEMHUSTChina@163.com</a></p><p>Huazhong University of Sci. &amp; Tech., Wuhan, China</p><p>1037# Luoyu Rd, Wuhan, P.R.China 430074</p><p>Copyright © <span>HUST-China </span>iGEM 2021</p></div><div class="col-5"><div class="row"><div class="footer-xmind"></div></div><div class="row"><div class="footer-snapgene"></div></div><div class="row"><div class="footer-NEBI"></div></div></div></div></div></footer><script src="https://2021.igem.org/Template:HUST-China/content-bundleJS?action=raw&amp;ctype=text/javascript"></script><script src="https://2021.igem.org/Template:HUST-China/mathjax-bundleJS?action=raw&amp;ctype=text/javascript"></script></body></html>
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            <h1 id="Top">Human Practices</h1>
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            <p class="lead pl-1">Formulate implementation plan</p>
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                        <p>Mr. Tony project is a large and systematic project of perming and dyeing, which also brings
 +
                            unprecedented challenges to our design and implementation plan. In the process of
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                            formulating specific plans, we always maintain close communication with scientists,
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                            entrepreneurs and practitioners, and listen to their stories, experiences and methods
 +
                            carefully. Finally, combined with their opinions, we conducted extensive discussions and
 +
                            formulated thorough project and specific implementation plans.Mr. Tony project is a large
 +
                            and systematic project of perming and dyeing, which also brings unprecedented challenges to
 +
                            our design and implementation plan. In the process of formulating specific plans, we always
 +
                            maintain close communication with scientists, entrepreneurs and practitioners, and listen to
 +
                            their stories, experiences and methods carefully. Finally, combined with their opinions, we
 +
                            conducted extensive discussions and formulated thorough project and specific implementation
 +
                            plans.</p>
 +
                        <h1>1 Professors and scientists</h1>
 +
                        <p>We have extensively visited many professors in various fields, and their opinions have played
 +
                            a vital role in our program formulation and problem improvement.</p>
 +
                        <h2>1.1 Xinhua Feng</h2>
 +
                        <div class="image"><img alt="Xinhua Feng "
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                                src="https://static.igem.org/mediawiki/2021/5/50/T--HUST-China--img--humanpractice--HP-2.1.1.1.jpg"
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                                style="width: 50%" />
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                            <p>Figure 1: Xinhua Feng</p>
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                        </div>
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                        <p>Professor Xinhua Feng is a member of the China Protein Professional Committee and he has a
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                            series of important research achievement in the fields of signal conduction and protein
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                            modification. During the experimental design phase, we consulted him how to assemble the
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                            PepACS peptide chain and achieve its extracellular expression and detection.</p>
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                        <div class="modal-btn"><button class="btn btn-warning pull-right" data-target="#Feng-Xinhua"
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                                data-toggle="modal" type="button">Read More</button>
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                                            <h5 class="modal-title" id="Feng-XinhuaLabel">Feng-Xinhua</h5>
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                                        <div class="modal-body">
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                                            <p>Q: Our reductive peptides PepA, PepC and SPB for perming are short and we
 +
                                                want to combine them into a chain because we are concerned that it is
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                                                difficult to express them. Is this feasible and will it interfere with
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                                                the effect of a single short peptide?</p>
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                                            <p>A: Professor Feng believes that short peptides of that length can be
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                                                expressed in extracellular successfully, they just can not be detected
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                                                easily. He said that when not combining, they would more likely
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                                                expression without being modified. On the other hand??that combined
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                                                expressions may affect the nature of each unit. The uncertainty of
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                                                heterogenous expression is high, and Professor Feng also encourages us
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                                                to validate the conjecture in the experiments ourselves.</p>
 +
                                            <p>After listening to Professor Feng's suggestion, we carried out a dry
 +
                                                experiment to test different kinds of combination??and selected the
 +
                                                combination with the highest redox potential. Then we used that one to
 +
                                                do our wet experiments.</p>
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                        </div>
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                        <h2>1.2 Dabiao Liu</h2>
 +
                        <div class="image"><img alt="Dabiao Liu "
 +
                                src="https://static.igem.org/mediawiki/2021/f/fb/T--HUST-China--img--humanpractice--HP-2.1.2.jpg"
 +
                                style="width: 50%" />
 +
                            <p>Figure 2: Dabiao Liu</p>
 +
                        </div>
 +
                        <p>Associate Professor Dabiao Liu is a professor of micro and nanomechanics in Huazhong
 +
                            University of Science and Technology. When we first measured the mechanical properties of
 +
                            hair, we used a tensometer in the laboratory, and found that our experimental method might
 +
                            be problematic. Therefore, we visited Associate Professor Dabiao Liu who was engaged in
 +
                            micro and nanomechanics measurement. He suggested that we use Young ' s modulus, stress
 +
                            limit and tensile limit length as mechanical indexes to measure the degree of hair damage
 +
                            after perming and dyeing. At the same time, he suggested that we use stress relaxation as a
 +
                            mechanical index to measure the curling maintenance ability of hair after perming and
 +
                            dyeing. He allowed us to borrow the micro-tensile / micro-torsional mechanical testing
 +
                            instrument and three-dimensional depth of field microscope in his laboratory. Under the
 +
                            guidance of his graduate students, we tested the mechanical properties of hair and obtained
 +
                            quantitative experimental results.</p>
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                                            <p>We met with Associate Professor Dabiao Liu in his laboratory after
 +
                                                contacting him. We told him about our purpose of measuring the
 +
                                                mechanical properties of hair before and after perming and dyeing, and
 +
                                                described the methods we currently used and the unsatisfactory
 +
                                                experimental results. He said the maximum tension obtained by hair was
 +
                                                greatly influenced by hair diameter, so tension was not the best
 +
                                                indicator to measure the mechanical properties of hair. Subsequently, he
 +
                                                said that to understand the damage degree of hair after perming and
 +
                                                dyeing, the essence was to explore the mechanical strength change of
 +
                                                hair material after perming and dyeing. Therefore, on the basis of
 +
                                                measuring the maximum tension, the Young's modulus and stress limit can
 +
                                                be obtained by dividing the diameter of hair to obtain the mechanical
 +
                                                strength of hair material. After we showed our hair samples, he said his
 +
                                                lab had equipment to measure the parameters needed to calculate Young '
 +
                                                s modulus. After several attempts, we determined that using Professor
 +
                                                Liu ' s equipment to measure the Young ' s modulus / stress limit of
 +
                                                hair is feasible.</p>
 +
                                            <p>When it comes to measuring the curling maintenance ability of permed
 +
                                                hair, he thought that we can solve this problem by measuring the stress
 +
                                                relaxation of hair. He said that the hair could return to the original
 +
                                                curl state after being subjected to a certain force. The essence was
 +
                                                that the hair still had a certain elasticity, and it could return to the
 +
                                                original state after elastic deformation under the force. When the force
 +
                                                on the hair increases to a certain extent, the elastic deformation part
 +
                                                of the hair decreases, the plastic deformation part increases, and the
 +
                                                curl of the hair cannot be maintained. At this time, the hair will slide
 +
                                                slowly along the external force, which can be used as a parameter to
 +
                                                calculate the stress relaxation. The micro-tensile / micro-torsional
 +
                                                mechanical testing instrument in Professor Liu ' s laboratory can
 +
                                                measure stress relaxation. Then, with the help of Professor Liu ' s
 +
                                                graduate students, we completed the processing of hair samples and the
 +
                                                measurement of hair parameters.</p>
 +
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                            </div>
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                        </div>
 +
                        <h2>1.3 Maoteng Li</h2>
 +
                        <div class="image"><img alt="Maoteng Li "
 +
                                src="https://static.igem.org/mediawiki/2021/2/29/T--HUST-China--img--humanpractice--HP-2.1.3.jpg"
 +
                                style="width: 50%" />
 +
                            <p>Figure 3: Maoteng Li</p>
 +
                        </div>
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                        <p>Professor Maoteng Li is engaged in botany, genetics and other research. In vica-micronucleus
 +
                            test we found that the micronucleus rate of indigo group was less than the negative control
 +
                            group. Therefore, we consulted Professor Li Maoteng who studied botany. Professor Li
 +
                            believed that the high concentration of solution may inhibit the division of cells in the
 +
                            dividing zone, and the existing experimental results alone cannot explain the safety of
 +
                            indigo. Therefore, we took Li teacher ' s proposal to experiment the lower concentration of
 +
                            indigo dye, and got a more convincing conclusion.</p>
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                                            <p>When we completed the analysis results of micronucleus test in
 +
                                                vica-micronucleus test, we found that with the increase of
 +
                                                concentration, the micronucleus first increased and then decreased, but
 +
                                                the data in indigo group did not show this trend, and the micronucleus
 +
                                                rates were lower than those in the negative control group. After
 +
                                                reviewing our experimental results, Professor Li said that although the
 +
                                                micronucleus rate of some groups was higher than the harmful standard,
 +
                                                compared with the chemical hair dyes purchased on the market, our
 +
                                                natural hair dyes had obviously lower micronucleus rate, indicating that
 +
                                                our products had a great advantage in safety and recognized the
 +
                                                practicability of our products. In view of our doubts about the indigo
 +
                                                group data, Li said that combined with the experimental phenomenon that
 +
                                                the micronucleus first increased and then decreased with the increase of
 +
                                                concentration, it could be speculated that high concentration ( or high
 +
                                                toxicity ) treatment may directly inhibit the division of root tip
 +
                                                meristemac zone cells. When the number of divided cells decreases, the
 +
                                                number of micronucleus that can be observed will naturally decrease. So
 +
                                                the result that overall indigo group less than the negative control does
 +
                                                not fully explain the safety of indigo. With the suggestion of Professor
 +
                                                Li, we reduced the concentration of indigo. The results showed that the
 +
                                                micronucleus rate of root tip treated with low concentration of indigo
 +
                                                solution increased, higher than the negative control group, but still
 +
                                                less than the same concentration of chemical hair dye group, which
 +
                                                proved the safety of our products more effectively.</p>
 +
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                            </div>
 +
                        </div>
 +
                        <h2>1.4 Tie Ke</h2>
 +
                        <div class="image"><img alt="Tie Ke "
 +
                                src="https://static.igem.org/mediawiki/2021/f/f1/T--HUST-China--img--humanpractice--HP-2.1.4.jpg"
 +
                                style="width: 50%" />
 +
                            <p>Figure 4: Tie Ke</p>
 +
                        </div>
 +
                        <p>Associate Professor Tie Ke is engaged in genetic research. After we finished the
 +
                            vica-micronucleus test, there were many questions about the analysis of experimental data
 +
                            and the reliability of the conclusion. Therefore, we consulted Associate Professor Tie Ke
 +
                            who studied genetics. Mr. Ke acknowledged our results, but also pointed out that abnormal
 +
                            data of indigo group, suggested that we should further experiment. In addition, Professor Ke
 +
                            was very interested in our developed algorithm for counting cell micronucleus, and expressed
 +
                            his willingness to use this tool in the subsequent teaching of this experiment.</p>
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                                            <p>Professor Tie Ke is not only a scholar in the field of genetics, but also
 +
                                                undertakes the teaching work of genetics experiments. The
 +
                                                vica-micronucleus test is one of his teaching contents, so he is more
 +
                                                familiar with the content of this experiment. We gave him a detailed
 +
                                                description of our experiments and showed our results. Professor Ke said
 +
                                                that from the ratio of our positive control to negative control, our
 +
                                                data were very reasonable, so the data of the experimental group also
 +
                                                had credibility, and the significant difference between our dye paste
 +
                                                and chemical dye paste could also explain the characteristics of our dye
 +
                                                paste safety and health. At the same time, he also pointed out that the
 +
                                                index of micronucleus of vicia faba root tips may be affected by many
 +
                                                factors. The data with large deviation should not be discarded directly,
 +
                                                but should be carefully analyzed and controlled as far as possible. With
 +
                                                his suggestion, we carried out further experiments, explored more
 +
                                                concentration gradients, and paid attention to controlling the
 +
                                                consistency of the dissolution of the dye paste. More reasonable
 +
                                                experimental data were obtained to prove the safety of our dye paste. In
 +
                                                addition, in this experiment, each root tip needs to count at least 1000
 +
                                                cells under the microscope to ensure the accuracy of the experimental
 +
                                                results. Mr. Ke said it used to be manual counting, with heavy workload
 +
                                                and uncontrollable errors. We use image recognition technology to
 +
                                                develop a counting micronucleus algorithm, which greatly improves the
 +
                                                experimental efficiency. Mr. Ke said he recognized our innovation, and
 +
                                                is willing to promote this new method in the next experimental teaching,
 +
                                                the results of our practice.</p>
 +
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                        </div>
 +
                        <h2>1.5 Jiangyun Wang</h2>
 +
                        <div class="image"><img alt="Jiangyun Wang "
 +
                                src="https://static.igem.org/mediawiki/2021/3/3c/T--HUST-China--img--humanpractice--HP-2.1.5.jpg"
 +
                                style="width: 50%" />
 +
                            <p>Figure 5: Jiangyun Wang</p>
 +
                        </div>
 +
                        <p>Wang Jiangyun Research Group is engaged in new methods of protein and RNA labeling. We
 +
                            communicated with Wang Jiangyun researcher and Liu Xiaohong researcher in the same group,
 +
                            and discussed the selection of quantum dot labeling elements. Finally, 5-carboxyfluorescein
 +
                            was chosen.</p>
 +
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                                            <p>We expect to connect short peptide PepACS with quantum dots to determine
 +
                                                the absorption of short peptide by hair. It was found that connecting
 +
                                                quantum dots may affect the redox potential of peptide chains and
 +
                                                further affect the effect of perm and dye. Therefore, the PepACS after
 +
                                                connecting quantum dots is better only used to detect absorption, and no
 +
                                                longer used to explore the changes of hair curl and mechanical
 +
                                                properties.</p>
 +
                                            <p>For multiple considerations, the label element was changed to 5 -
 +
                                                carboxyfluorescein. Because we will use different bleached hair (
 +
                                                different melanin content ) in the experiment, we fear that due to the
 +
                                                masking effect of melanin we will introduce irrelevant variables. We
 +
                                                asked Mr. Wang again and he believed that melanin in hair would not
 +
                                                cover the fluorescence intensity.</p>
 +
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                            </div>
 +
                        </div>
 +
                        <h2>1.6 Jun Hu</h2>
 +
                        <div class="image"><img alt="Jun Hu "
 +
                                src="https://static.igem.org/mediawiki/2021/d/db/T--HUST-China--img--humanpractice--HP-2.1.6.jpg"
 +
                                style="width: 50%" />
 +
                            <p>Figure 6: Jun Hu</p>
 +
                        </div>
 +
                        <p>Associate Professor Jun Hu is engaged in the research of nanomaterials. In the process of the
 +
                            communication with Associate Professor Jun Hu, we consulted the relevant information of
 +
                            quantum dots, which provided great help for the absorption verification experiment of short
 +
                            peptides. The team eventually decided to use common fluorescent molecules
 +
                            5-carboxyfluorescein for experiments.</p>
 +
                        <div class="modal-btn"><button class="btn btn-warning pull-right" data-target="#Hu-Jun"
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                                data-toggle="modal" type="button">Read More</button>
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                                            <p>We first explained the design idea of Mr. Tony project to Associate
 +
                                                Professor Hu Jun, and proposed that short peptides were coupled with
 +
                                                quantum dots by EDC / NHS method, and then the hair reacted with short
 +
                                                peptides. Finally, the absorption of short peptides by hair was observed
 +
                                                by fluorescence microscope. Associate Professor Hu pointed out that ( 1
 +
                                                ) purification methods need to be considered after the completion of
 +
                                                chemical coupling. It is suggested that ultrafiltration tube is more
 +
                                                convenient. ( 2 ) Quantum dots are too large compared with short
 +
                                                peptides with 42 amino acids, which may affect the function of short
 +
                                                peptides. ( 3 ) The preparation method of quantum dots is too complex,
 +
                                                which requires a long time for undergraduates to master. It is suggested
 +
                                                that commercial quantum dots should be purchased directly for
 +
                                                experiments.</p>
 +
                                            <p>By communicating with Mr. Hu, the team eventually decided to use the
 +
                                                common fluorescent molecule 5-carboxyfluorescein for experiments. The
 +
                                                molecular weight of 5-carboxyfluorescein is small and does not affect
 +
                                                the function of short peptides after coupling.</p>
 +
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                            </div>
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                        </div>
 +
                        <h2>1.7 Xiao Yi</h2>
 +
                        <div class="image"><img alt=" Xiao Yi"
 +
                                src="https://static.igem.org/mediawiki/2021/d/df/T--HUST-China--img--humanpractice--HP-2.1.7.jpg"
 +
                                style="width: 50%" />
 +
                            <p>Figure 7: Xiao Yi</p>
 +
                        </div>
 +
                        <p>Dr. Xiao Yi is a researcher of Institute of Synthetic Biology, Shenzhen Institute of Advanced
 +
                            Technology, Chinese Academy of Sciences, who has been engaged in the field of synthetic
 +
                            biology for a long time. Through the communication with Dr. Xiao Yi, the team members are
 +
                            more clear about the experimental ideas and development prospects of synthetic biology, and
 +
                            also obtained the relevant experience of rapid expression of target proteins in the
 +
                            laboratory. In addition, Dr Xiao Yi provides suggestions for the experimental design of our
 +
                            pathway and heterologous yeast chassis expression.</p>
 +
                        <h1>2 Enterprises and practitioners</h1>
 +
                        <p>The goal of our project is to produce a truly important product. We deeply realize that there
 +
                            is a huge gap between theoretical experiments and industrial applications. In order to
 +
                            shorten the difference between production, education and research as far as possible, we
 +
                            strengthen the close ties with enterprises from the beginning of the project implementation
 +
                            plan, and put their valuable opinions into the process of project progress.</p>
 +
                        <h2>2.1 Yantai Forestry Textile Printing and Dyeing Company Ltd</h2>
 +
                        <div class="image"><img alt="Yantai Forestry Textile Printing and Dyeing Company Ltd"
 +
                                src="https://static.igem.org/mediawiki/2021/b/b6/T--HUST-China--img--humanpractice--HP-2.2.1.png"
 +
                                style="width: 50%" />
 +
                            <p>Figure 8: Yantai Forestry Textile Printing and Dyeing Company Ltd</p>
 +
                        </div>
 +
                        <p>Yantai Forestry Textile Printing and Dyeing Company Ltd is a private enterprise which
 +
                            independently develops plant dyes to print and dye textiles. Its plant dye products also win
 +
                            many awards. In order to understand the coloring of plant dyes and to explore better mordant
 +
                            conditions, we visited Li Wei, the technical director of the company. The team members
 +
                            learned that the company had made many important breakthrough scientific and technological
 +
                            achievements in the field of plant dyes, understood the importance of the development of
 +
                            science and technology to the emerging environmental protection industry, and also clarified
 +
                            the major advantages of plant dyes in environmental protection. Director Li also provided
 +
                            advice on the selection of our mordant. Finally, combined with their professional knowledge
 +
                            and the technical experience of the company, the team members discussed about dye
 +
                            development prospects. The company ' s manager also expressed confidence and expectations
 +
                            for our project prospects and downstream applications.</p>
 +
                        <h2>2.2 Lianchuan Biology</h2>
 +
                        <div class="image"><img alt="Lianchuan Biology"
 +
                                src="https://static.igem.org/mediawiki/2021/a/a3/T--HUST-China--img--humanpractice--HP-2.2.2.jpg"
 +
                                style="width: 50%" />
 +
                            <p>Figure 9: Lianchuan Biology</p>
 +
                        </div>
 +
                        <p>Team leaders Changxin Fan and Jiacheng Shi interviewed Feiran Han, the technical director of
 +
                            Lianchuan Biology, communicated with them about the understanding of synthetic biology and
 +
                            our project design. Director Han pointed out that synthetic biology is now a rapidly
 +
                            developing field. Synthetic biology can be used for research in the upper, middle and lower
 +
                            reaches of biological fields such as basic research, technological development and
 +
                            industrial application. Its core idea is the idea of design and redesign and engineering
 +
                            systematization. With these thoughts, Director Han put forward his own opinions on our
 +
                            project : our project conformed to the standardization of synthetic biology in the
 +
                            construction process and it was also the embodiment of systematic thinking. But there was a
 +
                            lack of some engineering ideas in it. He pointed out that on the one hand, we could
 +
                            integrate multiple functions that we want to achieve; on the other hand, we could add logic
 +
                            gates in it so that more functions could be achieved through regulation in a smaller system,
 +
                            and it is easier to achieve quantitative regulation of each function. Based on the proposal
 +
                            of Director Han, we integrate the two devices of dyeing and fading, and use two different
 +
                            promoters to regulate them, so that the other part is closed when one part works.</p>
 +
                        <h2>2.3 Nine-source gene</h2>
 +
                        <div class="image"><img alt="Nine-source gene"
 +
                                src="https://static.igem.org/mediawiki/2021/f/fa/T--HUST-China--img--humanpractice--HP-2.2.3.jpg"
 +
                                style="width: 50%" />
 +
                            <p>Figure 10: Nine-source gene</p>
 +
                        </div>
 +
                        <p>Team leader Changxin Fan and Jiacheng Shi had a discussion with Feihu Xu, the head of Jiuyuan
 +
                            Gene Development Department. Both of them discussed the characteristics of various chassis
 +
                            for synthetic biology applications, especially for Pichia pastoris GS115. Director Xu has a
 +
                            wealth of experience in heterologous expression using yeast as a chassis organism. He
 +
                            pointed out that signal peptides played a very important role in heterologous extracellular
 +
                            expression using the eukaryotic system, while signal peptides from different sources and
 +
                            different structures are different. Some signal peptides may not secrete a certain protein,
 +
                            but another signal peptide or protein can be synthesized and secreted in large quantities.
 +
                            Eukaryotic system expression is a very complex process, the transformation, screening,
 +
                            replication, transcription, translation, folding, transportation and other processes all
 +
                            need to be considered and optimized. Based on the suggestions of Director Xu, we chose the
 +
                            α-factor operon with commonly used signal peptide for extracellular expression, and the
 +
                            operon without signal peptide for intracellular expression. All components were expressed in
 +
                            both intracellular and extracellular ways and we should verify which expression is more
 +
                            appropriate.</p>
 +
                        <h2>2.4 Barbershop</h2>
 +
                        <div class="image"><img alt="Barbershop"
 +
                                src="https://static.igem.org/mediawiki/2021/4/41/T--HUST-China--img--humanpractice--HP-2.2.4.jpg"
 +
                                style="width: 50%" />
 +
                            <p>Figure 11: Barbershop</p>
 +
                        </div>
 +
                        <p>In the preliminary experiment of the project, we found that with temperature and other
 +
                            conditions the coloring effect of chemical dyes and plant dyes fluctuated greatly. In order
 +
                            to find a solution, iGEM HUST-China team members visited a private barbershop in Wuhan,
 +
                            Hubei Province. During the conversation with the manager, we learned that in the practical
 +
                            application process, hair dye does not act solely on hair, and the coloring effect itself is
 +
                            closely related to temperature and oxidant content. The manager also recommended some
 +
                            tentative plans for perming and dyeing hair. In addition, we have learned that the low
 +
                            prevalence of plant hair dyes is mainly due to their relatively high prices and poor color
 +
                            fixation effect. The barber 's manager also revealed expectations that technology could help
 +
                            improve products.</p>
 +
                        <h1>3 Our design</h1>
 +
                        <p>After a series of visits and consultations, we finally confirmed Mr. Tony ' s overall project
 +
                            plan combined with the suggestions of scientists and professors.</p>
 +
                        <p>Mr. Tony project combines promoter, signal peptide, gene encoding protein, terminator and
 +
                            other parts to form a device that can express a certain kind of protein, and then combines
 +
                            functional related devices to form a system. We use molecular biology and microbiotechnology
 +
                            to construct the system, which can express some enzymes to synthesize a kind of pigment or
 +
                            short peptide to perm, and express other enzymes to degrade a kind of pigment or straighten
 +
                            the hair. We then transfer the constructed three systems into three engineering yeasts using
 +
                            Pichia pastoris GS115 as the chassis strain. Through this way, when glycerol is used as
 +
                            carbon source, engineering yeast could express short peptides that can make hair curls and
 +
                            enzymes that can synthesize pigments. These enzymes could synthesize three kinds of pigments
 +
                            respectively with the added components in the system as substrates. When xylose is used as
 +
                            carbon source, engineering yeast could express short peptides used to straighten hair and
 +
                            enzymes that degrade pigments, using three pigments as substrates, respectively. After the
 +
                            fermentation of engineering yeast, the pigments, decolorizing enzymes and short peptides are
 +
                            separated and extracted. We carry out a series of experiments with the extracts to determine
 +
                            the optimal working environment of the project and compare the advantages and disadvantages
 +
                            of traditional chemical perm and dye and biological perm and dye in this project.</p>
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                                    <p>I'm so impressed!!! Thank you for reminding me that the process of developing a
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                                        plan also needs to be accompanied by communication and practice!! I'm even more
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                                        curious about your third part: <a
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                                            href="https://2021.igem.org/Team:HUST-China/Collaboration">Project
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                                            development and assessment</a>!</p>
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Revision as of 00:54, 22 October 2021

Human Practices | iGEM HUST-China

Human Practices

Formulate implementation plan


Mr. Tony project is a large and systematic project of perming and dyeing, which also brings unprecedented challenges to our design and implementation plan. In the process of formulating specific plans, we always maintain close communication with scientists, entrepreneurs and practitioners, and listen to their stories, experiences and methods carefully. Finally, combined with their opinions, we conducted extensive discussions and formulated thorough project and specific implementation plans.Mr. Tony project is a large and systematic project of perming and dyeing, which also brings unprecedented challenges to our design and implementation plan. In the process of formulating specific plans, we always maintain close communication with scientists, entrepreneurs and practitioners, and listen to their stories, experiences and methods carefully. Finally, combined with their opinions, we conducted extensive discussions and formulated thorough project and specific implementation plans.

1 Professors and scientists

We have extensively visited many professors in various fields, and their opinions have played a vital role in our program formulation and problem improvement.

1.1 Xinhua Feng

Xinhua Feng

Figure 1: Xinhua Feng

Professor Xinhua Feng is a member of the China Protein Professional Committee and he has a series of important research achievement in the fields of signal conduction and protein modification. During the experimental design phase, we consulted him how to assemble the PepACS peptide chain and achieve its extracellular expression and detection.

1.2 Dabiao Liu

Dabiao Liu

Figure 2: Dabiao Liu

Associate Professor Dabiao Liu is a professor of micro and nanomechanics in Huazhong University of Science and Technology. When we first measured the mechanical properties of hair, we used a tensometer in the laboratory, and found that our experimental method might be problematic. Therefore, we visited Associate Professor Dabiao Liu who was engaged in micro and nanomechanics measurement. He suggested that we use Young ' s modulus, stress limit and tensile limit length as mechanical indexes to measure the degree of hair damage after perming and dyeing. At the same time, he suggested that we use stress relaxation as a mechanical index to measure the curling maintenance ability of hair after perming and dyeing. He allowed us to borrow the micro-tensile / micro-torsional mechanical testing instrument and three-dimensional depth of field microscope in his laboratory. Under the guidance of his graduate students, we tested the mechanical properties of hair and obtained quantitative experimental results.

1.3 Maoteng Li

Maoteng Li

Figure 3: Maoteng Li

Professor Maoteng Li is engaged in botany, genetics and other research. In vica-micronucleus test we found that the micronucleus rate of indigo group was less than the negative control group. Therefore, we consulted Professor Li Maoteng who studied botany. Professor Li believed that the high concentration of solution may inhibit the division of cells in the dividing zone, and the existing experimental results alone cannot explain the safety of indigo. Therefore, we took Li teacher ' s proposal to experiment the lower concentration of indigo dye, and got a more convincing conclusion.

1.4 Tie Ke

Tie Ke

Figure 4: Tie Ke

Associate Professor Tie Ke is engaged in genetic research. After we finished the vica-micronucleus test, there were many questions about the analysis of experimental data and the reliability of the conclusion. Therefore, we consulted Associate Professor Tie Ke who studied genetics. Mr. Ke acknowledged our results, but also pointed out that abnormal data of indigo group, suggested that we should further experiment. In addition, Professor Ke was very interested in our developed algorithm for counting cell micronucleus, and expressed his willingness to use this tool in the subsequent teaching of this experiment.

1.5 Jiangyun Wang

Jiangyun Wang

Figure 5: Jiangyun Wang

Wang Jiangyun Research Group is engaged in new methods of protein and RNA labeling. We communicated with Wang Jiangyun researcher and Liu Xiaohong researcher in the same group, and discussed the selection of quantum dot labeling elements. Finally, 5-carboxyfluorescein was chosen.

1.6 Jun Hu

Jun Hu

Figure 6: Jun Hu

Associate Professor Jun Hu is engaged in the research of nanomaterials. In the process of the communication with Associate Professor Jun Hu, we consulted the relevant information of quantum dots, which provided great help for the absorption verification experiment of short peptides. The team eventually decided to use common fluorescent molecules 5-carboxyfluorescein for experiments.

1.7 Xiao Yi

 Xiao Yi

Figure 7: Xiao Yi

Dr. Xiao Yi is a researcher of Institute of Synthetic Biology, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, who has been engaged in the field of synthetic biology for a long time. Through the communication with Dr. Xiao Yi, the team members are more clear about the experimental ideas and development prospects of synthetic biology, and also obtained the relevant experience of rapid expression of target proteins in the laboratory. In addition, Dr Xiao Yi provides suggestions for the experimental design of our pathway and heterologous yeast chassis expression.

2 Enterprises and practitioners

The goal of our project is to produce a truly important product. We deeply realize that there is a huge gap between theoretical experiments and industrial applications. In order to shorten the difference between production, education and research as far as possible, we strengthen the close ties with enterprises from the beginning of the project implementation plan, and put their valuable opinions into the process of project progress.

2.1 Yantai Forestry Textile Printing and Dyeing Company Ltd

Yantai Forestry Textile Printing and Dyeing Company Ltd

Figure 8: Yantai Forestry Textile Printing and Dyeing Company Ltd

Yantai Forestry Textile Printing and Dyeing Company Ltd is a private enterprise which independently develops plant dyes to print and dye textiles. Its plant dye products also win many awards. In order to understand the coloring of plant dyes and to explore better mordant conditions, we visited Li Wei, the technical director of the company. The team members learned that the company had made many important breakthrough scientific and technological achievements in the field of plant dyes, understood the importance of the development of science and technology to the emerging environmental protection industry, and also clarified the major advantages of plant dyes in environmental protection. Director Li also provided advice on the selection of our mordant. Finally, combined with their professional knowledge and the technical experience of the company, the team members discussed about dye development prospects. The company ' s manager also expressed confidence and expectations for our project prospects and downstream applications.

2.2 Lianchuan Biology

Lianchuan Biology

Figure 9: Lianchuan Biology

Team leaders Changxin Fan and Jiacheng Shi interviewed Feiran Han, the technical director of Lianchuan Biology, communicated with them about the understanding of synthetic biology and our project design. Director Han pointed out that synthetic biology is now a rapidly developing field. Synthetic biology can be used for research in the upper, middle and lower reaches of biological fields such as basic research, technological development and industrial application. Its core idea is the idea of design and redesign and engineering systematization. With these thoughts, Director Han put forward his own opinions on our project : our project conformed to the standardization of synthetic biology in the construction process and it was also the embodiment of systematic thinking. But there was a lack of some engineering ideas in it. He pointed out that on the one hand, we could integrate multiple functions that we want to achieve; on the other hand, we could add logic gates in it so that more functions could be achieved through regulation in a smaller system, and it is easier to achieve quantitative regulation of each function. Based on the proposal of Director Han, we integrate the two devices of dyeing and fading, and use two different promoters to regulate them, so that the other part is closed when one part works.

2.3 Nine-source gene

Nine-source gene

Figure 10: Nine-source gene

Team leader Changxin Fan and Jiacheng Shi had a discussion with Feihu Xu, the head of Jiuyuan Gene Development Department. Both of them discussed the characteristics of various chassis for synthetic biology applications, especially for Pichia pastoris GS115. Director Xu has a wealth of experience in heterologous expression using yeast as a chassis organism. He pointed out that signal peptides played a very important role in heterologous extracellular expression using the eukaryotic system, while signal peptides from different sources and different structures are different. Some signal peptides may not secrete a certain protein, but another signal peptide or protein can be synthesized and secreted in large quantities. Eukaryotic system expression is a very complex process, the transformation, screening, replication, transcription, translation, folding, transportation and other processes all need to be considered and optimized. Based on the suggestions of Director Xu, we chose the α-factor operon with commonly used signal peptide for extracellular expression, and the operon without signal peptide for intracellular expression. All components were expressed in both intracellular and extracellular ways and we should verify which expression is more appropriate.

2.4 Barbershop

Barbershop

Figure 11: Barbershop

In the preliminary experiment of the project, we found that with temperature and other conditions the coloring effect of chemical dyes and plant dyes fluctuated greatly. In order to find a solution, iGEM HUST-China team members visited a private barbershop in Wuhan, Hubei Province. During the conversation with the manager, we learned that in the practical application process, hair dye does not act solely on hair, and the coloring effect itself is closely related to temperature and oxidant content. The manager also recommended some tentative plans for perming and dyeing hair. In addition, we have learned that the low prevalence of plant hair dyes is mainly due to their relatively high prices and poor color fixation effect. The barber 's manager also revealed expectations that technology could help improve products.

3 Our design

After a series of visits and consultations, we finally confirmed Mr. Tony ' s overall project plan combined with the suggestions of scientists and professors.

Mr. Tony project combines promoter, signal peptide, gene encoding protein, terminator and other parts to form a device that can express a certain kind of protein, and then combines functional related devices to form a system. We use molecular biology and microbiotechnology to construct the system, which can express some enzymes to synthesize a kind of pigment or short peptide to perm, and express other enzymes to degrade a kind of pigment or straighten the hair. We then transfer the constructed three systems into three engineering yeasts using Pichia pastoris GS115 as the chassis strain. Through this way, when glycerol is used as carbon source, engineering yeast could express short peptides that can make hair curls and enzymes that can synthesize pigments. These enzymes could synthesize three kinds of pigments respectively with the added components in the system as substrates. When xylose is used as carbon source, engineering yeast could express short peptides used to straighten hair and enzymes that degrade pigments, using three pigments as substrates, respectively. After the fermentation of engineering yeast, the pigments, decolorizing enzymes and short peptides are separated and extracted. We carry out a series of experiments with the extracts to determine the optimal working environment of the project and compare the advantages and disadvantages of traditional chemical perm and dye and biological perm and dye in this project.

I'm so impressed!!! Thank you for reminding me that the process of developing a plan also needs to be accompanied by communication and practice!! I'm even more curious about your third part: Project development and assessment!

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