Difference between revisions of "Team:Shanghai Metro HS/Description"

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<h3>★  ALERT! </h3>
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<p>This page is used by the judges to evaluate your team for the <a href="https://2021.igem.org/Judging/Medals">medal criterion</a> or <a href="https://2021.igem.org/Judging/Awards"> award listed below</a>. </p>
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<h1>Project Description </h1>
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<h3>Bronze Medal Criterion #3</h3>
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<p>Describe how and why you chose your iGEM project.
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<br><br>
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Please see the <a href="https://2021.igem.org/Judging/Medals">2021 Medals Page</a> for more information.
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<h3>What should this page contain?</h3>
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<li> A clear and concise description of your project.</li>
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<li>A detailed explanation of why your team chose to work on this particular project.</li>
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<li>References and sources to document your research.</li>
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<li>Use illustrations and other visual resources to explain your project.</li>
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<h3>Inspiration</h3>
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<p>See how other teams have described and presented their projects: </p>
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<ul>
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<li><a href="https://2019.igem.org/Team:Leiden/Description">2019 Leiden</a></li>
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<li><a href="https://2019.igem.org/Team:ITESO_Guadalajara/Description">2019 ITESO Guadalajara</a></li>
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<li><a href="https://2020.igem.org/Team:Technion-Israel/Description">2020 Technion Israel</a></li>
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<li><a href="https://2020.igem.org/Team:Botchan_Lab_Tokyo/Description">2020 Botchan Lab Tokyo</a></li>
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<li><a href="https://2020.igem.org/Team:St_Andrews/Description">2020 St Andrews</a></li>
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<li><a href="https://2020.igem.org/Team:MIT/Description">2020 MIT</a></li>
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</ul>
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</div>
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</div>
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<div class="column two_thirds_size" >
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<h3>Advice on writing your Project Description</h3>
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We encourage you to put up a lot of information and content on your wiki, but we also encourage you to include summaries as much as possible. If you think of the sections in your project description as the sections in a publication, you should try to be concise, accurate, and unambiguous in your achievements. Your Project Description should include more information than your project abstract.
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</p>
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</div>
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<div class="column third_size">
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<h3>References</h3>
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<p>iGEM teams are encouraged to record references you use during the course of your research. They should be posted somewhere on your wiki so that judges and other visitors can see how you thought about your project and what works inspired you.</p>
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        <div class="sub-title">Project Description</div>
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        <div class="article-title black-font">Background and Inspiration</div>
 +
        <div class="article-content"><b>• Ruminants</b> </div>
 +
        <div class="img-wrap no-margin">
 +
            <img src="https://static.igem.org/mediawiki/2021/0/01/T--Shanghai_Metro_HS--Project_Description01.jpg" alt="" />
 +
        </div>
 +
        <div class="article-content">Ruminants make up the majority of our daily meals, but what exactly do "ruminants"
 +
            mean? Elegantly speaking, "ruminant" is the process of re-digesting the food they eat. This function is
 +
            because they have more than one stomach, which make them capable of digesting the cellulose in the grass.
 +
        </div>
 +
        <div class="article-content">Ruminants have played an integral part in human history. Humans can barely digest
 +
            cellulose from agricultural and by-products. Meanwhile, ruminants can solve these problems since they can
 +
            break down these hard-to-absorb things into monosaccharides and polysaccharides, which transform into beef
 +
            and mutton that we eat. In the transformation process, the protein conversion rate (i.e., the ratio of the
 +
            energy intake of ruminants to the amount of energy that humans get) is high.</div>
 +
        <div class="article-content">According to professionals, the demand for ruminant feed in 2006 was 45.19 million
 +
            tons, but the supply was only 6.52 million tons. Supply is nearly one-seventh of market demand. Such feed
 +
            shortages have prevented ruminant populations from meeting market demand.</div>
 +
        <div class="article-content"><b>• Silage </b> </div>
 +
        <div class="img-wrap no-margin">
 +
            <img src="https://static.igem.org/mediawiki/2021/e/e8/T--Shanghai_Metro_HS--Project_Description02.jpg" alt="" />
 +
        </div>
 +
        <div class="article-content">Silage is a kind of natural plant feed. It is made from chopped-up plant stems and
 +
            leaves with a water content of 65%-75%, and is under the condition of closed hypoxia, using the fermentation
 +
            effect of anaerobic lactic acid bacteria to inhibit the reproduction of various bacteria. Silage is mainly
 +
            used to feed ruminants (cattle, sheep, alpacas, and deer). Silage can be more easily stored than fresh feed.
 +
            It is also rich in nutrition, which makes it an excellent feed source for livestock.</div>
 +
        <div class="article-content">Silage gradually occupies a more significant proportion of the market for ruminant
 +
            feed due to its advantages. In 2015, the demand for silage was 65.4% in the cattle farming industry and
 +
            21.5% in the sheep farming industry. The total demand for the cattle and sheep farming industry is expected
 +
            to be around 67.3% by 2022.</div>
 +
        <div class="article-content">In spite of silage's inestimable advantages, it is not perfect. Silage contains a
 +
            large amount of cellulose, the main structural component of plant cell walls, usually combined with
 +
            hemicelluloses, pectin, and lignin, making them difficult to digest and absorb. Ruminants can decompose them
 +
            into monosaccharide and disaccharide. These sugars can later be absorbed and go through body oxidation to
 +
            produce the energy they need to supply metabolic activities or combine into fat storage.</div>
 +
        <div class="article-content"><b>• Cellulase </b> </div>
 +
        <div class="article-content">In nature, fungi have the strong ability to degrade cellulose and produce enzymes
 +
            throughout the process. But the enzyme (cellulase) produced is usually acid resistant, limiting its
 +
            potential industrial production. Compared to fungi, bacteria grow more rapidly, are easier to have higher
 +
            cellulase production, and with several other advantages. The cellulase produced would attach itself to the
 +
            surface of the cellulose and degrade it from the inside. According to Lu et al., cellulase produced by
 +
            PKC-001 strain of Pseudomonas aeruginosa were detected active under both alkaline and acidic environment,
 +
            which allows its cellulase to be mass-produced and for commercial use.</div>
 +
        <div class="article-title black-font">Goal</div>
 +
        <div class="article-content">Our team is working on an additive that could help degrade the cellulose in silage
 +
            to make it easier to be absorbed so as to improve ruminants' ability to acquire monosaccharides. Besides, it
 +
            will also enhance its taste as there would be more soluble and sweet monosaccharides less insoluble
 +
            cellulose. With our special addictive, the improved silage can promote the appetite of livestock, supplement
 +
            the content of various digestive enzymes in ruminants' bodies, which prevents some common gastrointestinal
 +
            diseases in livestock. For consumers, all the above vastly improve the quality of livestock products.</div>
 +
        <div class="img-wrap no-margin">
 +
            <img src="https://static.igem.org/mediawiki/2021/f/fc/T--Shanghai_Metro_HS--Project_Description03.jpg" alt="" />
 +
        </div>
 +
        <div class="article-content">In order to achieve our final goal, we target the gene in PKC-001 strain of
 +
            Pseudomonas aeruginosa which could secret the high-quality cellulase to construct our engineered bacteria.
 +
            Firstly, we optimized the PKC-001 gene for adapting to the recipient cell - E. coli BL21 and constructed a
 +
            plasmid with the vector pET-25b which contains a pelB signal peptide to improve the protein expression.
 +
            After being transformed into the E. coli BL21, several experiments including the protein-induced expression
 +
            would be conducted to analyze the performance of this engineered strain.</div>
 +
        <div class="article-title black-font">Reference</div>
 +
        <div class="article-content">1. MUCK R,NADEAU E,MCALLISTER T,et al. Silage review: recent advances and future
 +
            uses of silage additives [J]. J Dairy Sci,</div>
 +
        <div class="article-content">2. 刘海燕,张鹏举,王秀飞,等. 正交试验法优化玉米秸秆穰叶青贮发酵剂的研究 [J]. 中国饲料,2018 ( 11) : 74-79.</div>
 +
        <div class="article-content">3. Coward-Kelly G., Aiello-Mazzari C., Kim S., Granda C., and Holtzapple M., 2003,
 +
            Suggested improvements to the standard filter paper assay used to measure cellulase activity,Biotechnology &
 +
            Bioengineering, 82(6): 745-749.</div>
 +
        <div class="article-content">4. Ghose T.K., 1987, Measurement of cellulase activities, Pure & Appl Chem, 59(2):
 +
            257-268.</div>
 +
        <div class="article-content">5. Lu Z.L., Chen D., Zhang S.S., Lu Q., and Huang R.B., 2012, A Pseudomonas
 +
            aeruginosa producing alkaline cellulase, China Patent, 2012103821716</div>
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Revision as of 15:56, 28 September 2021

Shanghai_Metro_HS

Project Description
Background and Inspiration
• Ruminants
Ruminants make up the majority of our daily meals, but what exactly do "ruminants" mean? Elegantly speaking, "ruminant" is the process of re-digesting the food they eat. This function is because they have more than one stomach, which make them capable of digesting the cellulose in the grass.
Ruminants have played an integral part in human history. Humans can barely digest cellulose from agricultural and by-products. Meanwhile, ruminants can solve these problems since they can break down these hard-to-absorb things into monosaccharides and polysaccharides, which transform into beef and mutton that we eat. In the transformation process, the protein conversion rate (i.e., the ratio of the energy intake of ruminants to the amount of energy that humans get) is high.
According to professionals, the demand for ruminant feed in 2006 was 45.19 million tons, but the supply was only 6.52 million tons. Supply is nearly one-seventh of market demand. Such feed shortages have prevented ruminant populations from meeting market demand.
• Silage
Silage is a kind of natural plant feed. It is made from chopped-up plant stems and leaves with a water content of 65%-75%, and is under the condition of closed hypoxia, using the fermentation effect of anaerobic lactic acid bacteria to inhibit the reproduction of various bacteria. Silage is mainly used to feed ruminants (cattle, sheep, alpacas, and deer). Silage can be more easily stored than fresh feed. It is also rich in nutrition, which makes it an excellent feed source for livestock.
Silage gradually occupies a more significant proportion of the market for ruminant feed due to its advantages. In 2015, the demand for silage was 65.4% in the cattle farming industry and 21.5% in the sheep farming industry. The total demand for the cattle and sheep farming industry is expected to be around 67.3% by 2022.
In spite of silage's inestimable advantages, it is not perfect. Silage contains a large amount of cellulose, the main structural component of plant cell walls, usually combined with hemicelluloses, pectin, and lignin, making them difficult to digest and absorb. Ruminants can decompose them into monosaccharide and disaccharide. These sugars can later be absorbed and go through body oxidation to produce the energy they need to supply metabolic activities or combine into fat storage.
• Cellulase
In nature, fungi have the strong ability to degrade cellulose and produce enzymes throughout the process. But the enzyme (cellulase) produced is usually acid resistant, limiting its potential industrial production. Compared to fungi, bacteria grow more rapidly, are easier to have higher cellulase production, and with several other advantages. The cellulase produced would attach itself to the surface of the cellulose and degrade it from the inside. According to Lu et al., cellulase produced by PKC-001 strain of Pseudomonas aeruginosa were detected active under both alkaline and acidic environment, which allows its cellulase to be mass-produced and for commercial use.
Goal
Our team is working on an additive that could help degrade the cellulose in silage to make it easier to be absorbed so as to improve ruminants' ability to acquire monosaccharides. Besides, it will also enhance its taste as there would be more soluble and sweet monosaccharides less insoluble cellulose. With our special addictive, the improved silage can promote the appetite of livestock, supplement the content of various digestive enzymes in ruminants' bodies, which prevents some common gastrointestinal diseases in livestock. For consumers, all the above vastly improve the quality of livestock products.
In order to achieve our final goal, we target the gene in PKC-001 strain of Pseudomonas aeruginosa which could secret the high-quality cellulase to construct our engineered bacteria. Firstly, we optimized the PKC-001 gene for adapting to the recipient cell - E. coli BL21 and constructed a plasmid with the vector pET-25b which contains a pelB signal peptide to improve the protein expression. After being transformed into the E. coli BL21, several experiments including the protein-induced expression would be conducted to analyze the performance of this engineered strain.
Reference
1. MUCK R,NADEAU E,MCALLISTER T,et al. Silage review: recent advances and future uses of silage additives [J]. J Dairy Sci,
2. 刘海燕,张鹏举,王秀飞,等. 正交试验法优化玉米秸秆穰叶青贮发酵剂的研究 [J]. 中国饲料,2018 ( 11) : 74-79.
3. Coward-Kelly G., Aiello-Mazzari C., Kim S., Granda C., and Holtzapple M., 2003, Suggested improvements to the standard filter paper assay used to measure cellulase activity,Biotechnology & Bioengineering, 82(6): 745-749.
4. Ghose T.K., 1987, Measurement of cellulase activities, Pure & Appl Chem, 59(2): 257-268.
5. Lu Z.L., Chen D., Zhang S.S., Lu Q., and Huang R.B., 2012, A Pseudomonas aeruginosa producing alkaline cellulase, China Patent, 2012103821716