Difference between revisions of "Team:IISER-Tirupati India/Implementation"

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                        <h2>Introduction</h2>
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                     <div class="col-md-4 col-lg-3 p-2 d-none d-md-block" style="background-color: #FFBD59 !important; color: #8D1063;">
                        <p>Natural systems are highly complex to understand as well as to experiment with. To make predictions of the outcomes,
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                        <div class="card" style=" max-width: 15.5rem; border: none !important;background-color:#FFBD59;" id="index">
                            we use the available information and the knowledge of physics, mathematics, chemistry, and computer science to build a theoretical model. This page deals with the models built on the different aspects of our project namely :</p>
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                             <div class="card-body">
                            <ol>
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                                 <h3 class="card-title text-center mb-3">INDEX</h3>
                                <li>GMO delivery</li>
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                                <section id="Index1">
                                <li>GMO growth and colonisation</li>
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                                     <ul>
                                <li>Protease production</li>
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                                         <li><a class="index_link" href="#1">END USERS</a></li>
                                <li>Diffusion and ovum Hardening</li>
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                                         <li><a class="index_link" href="#2">Implementation</a></li>
                                <li>Kill switch for reversibility</li>
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                                        <li><a class="index_link" href="#3">Safety Aspects</a></li>
                                <li>Kill switch for Biosafety</li>
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                                        <li><a class="index_link" href="#4">Challenges</a></li>  
                                </ol>
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                                        <li><a class="index_link" href="#5">Conclusion</a></li>  
                            <h2>Delivery & Colonisation</h2><br>
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                                        <li><a class="index_link" href="#6">Reference</a></li>  
                            <h3>INTRODUCTION: THE JOURNEY OF GMO BEGINS</h3><br>
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                                     </ul>                        
                            <h4>PART A: Delivery</h4><br>
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                                 </section>
                            <h5>OVERVIEW</h5>
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                            </div>
                            <p>Delivery is an essential part of our project as it determines the audience we reach. We tried to develop multiple
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                          </div>
                                ways to deliver GMO in a user-friendly way with minimum invasion. Minimum invasion means it should not colonize
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                                the whole reproductive tract or reach the ovaries. The device should ensure bacterial colonization in the ampulla
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                                of the fallopian tube.
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                                One of the constraints that we faced is the high viscosity of the oviductal fluid.</p><P>
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                                After calculating the time taken for delivery in each method, talking to a couple of IVF experts, and getting their
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                                inputs into it,we thought hysteroscopic techniques would be the best for our purpose. This method gives us an advantage
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                                by delivering the bacteria directly into the ampulla region.</p>
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                            <h5>DEVICE DESIGNING (How to deliver?)</h5>
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                            <p>GMO will be delivered directly to the ampulla by a process called Hysteroscopy. It’s done with medical assistance and requires
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                                constant X-Ray monitoring to ensure the catheter is inserted without any issues. The reason is that the Ostia and the Fallopian
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                                tube are dynamic structures and that there is no chemical or significant physical difference between the ampulla and the other
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                                components of the Fallopian tube.</p>
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                            <p>A solution of GMO of a specific concentration is prepared. Then the catheter is inserted under medical guidance up to the ampulla.
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                                Then an injector is projected with narrow long incisions on both sides of it, which ensures that the GMO forms a ring along the
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                                circumference of the tube. Ovum is now
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                                360° surrounded by the GMO. </p>
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                            <p>The GMO Lactobacillus Acidophilus has pili which expectantly forms hydrogen bonds at the tube circumference with mucin found in mucus.
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                                The GMO is now adhered to the walls and multiplies once it adjusts to the introduced environment (lag phase) </p>
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                            <h5>FUTURE ASPECTS:</h5>
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                            <p>Since we aim to reach a larger population, the hysteroscopic technique, we believe, is too expensive.
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                                We also considered using hydrogels for the delivery of bacteria at a pH-specific region.</p><P>
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                                Why is this system compatible with the delivery of bacteria in the ampulla of the Fallopian tube region?</P><P>
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                                We found out that the pH in the oviductal Ampulla region is close to 8.0.
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                                That’s why we considered using hydrogels for bacterial delivery, which swells up at a pH range of 7.8 to 8.0. </P><P>
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                                Amongst the stimuli-responsive hydrogels, pH-sensitive hydrogels are the most studied hydrogels. The rate at
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                                which hydrogels respond depends upon their size, shape, cross-linking density, number of ionic groups, and composition,
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                                which can be tailored by varying these factors. The response rate increases with increasing pore size and number of ionic
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                                groups and decreasing their size and cross-linking density.</P><P>
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                                For a delivery in a basic medium, we planned to use anionic hydrogels, such as carboxymethyl chitosan, which swell at higher
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                                pH (basic medium) due to ionization of the acidic groups. As a result, the ionized negatively charged pendant groups on the
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                                polymer chains cause repulsion leading to swelling. This property of hydrogels can be exploited for GMO delivery at pH 7.4
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                                in the ampulla of the fallopian tube. </p>
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                            <h5>CELL ENCAPSULATION (What to deliver?)</h5>
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                            <p>Our goal is to design a live-bacteria entrapment system. More than just encapsulating bacteria, we want to entirely prevent
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                                their escape from the bead body into the surroundings.</p>
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                            <p>The Oviductal Fluid is slightly alkaline (ph 7.4 to 7.7), so we need our encapsulating membrane to dissolve away at this pH.
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                                Potential candidates for hydrogel materials include chitosan, guar gum, and xanthan. Chitosan forms Hydrogen bonds with the
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                                mucin protein in the mucus allowing for the anchoring at the walls and preventing the hydrogels from getting washed away.</p>
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                            <h4>PART B: Colonization</h4><br>
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                            <h5>OVERVIEW (why is it necessary to study growth and colonization)</h5>
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                            <p>In biosynthesis, growth kinetics is a crucial study to be conducted. The growth of a cell comprises both the size and the number.
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                                These growths are affected by external factors such as temperature, the chemical composition of the growth nutrient, etc., and by
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                                different physiological factors such as growth factor proteins[1][2]. The cells in a particular environment extract the nutrients
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                                from the growth media and produce biomolecules, which humans utilize for different purposes. This phenomenon has applications, from
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                                producing delicious Italian wine to getting antibiotics which saves millions of lives every year. We will be using this simple
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                                formula to reach the goals of our project. To have a qualitative understanding of the protein production by the Genetically Modified
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                                anism(GMO), we need to have a theoretical approach. We need to understand how we can calculate the growth of GMOs [3]. This, in turn,
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                                will help us figure out protein production. This detailed study of growth kinetics will help us calculate the initial inoculation
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                                required for the production of a protein that we need.</p>
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                            <p>For a better understanding, we will be considering two cases. The first comprises the study of the growth of Bacillus Subtilis in
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                                normal petri dish conditions. This is the known environment and we can have this condition easily in computer simulation and/or lab
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                                and reconfirm our model. The second case of study is the continuous culture model where we study the growth of Lactobacillus
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                                Acidophilus in the fallopian tube, which is our target region.  </p>
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                            <h6>GROWTH MODELS</h6><br>
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                            <p>PETRI DISH MODEL (Bacillus Subtilis, curve fitting)</p><br>
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                            <p>CONTINUOUS CULTURE MODEL (lactobacillus acidophilus + fallopian tube environment)</p><br>
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                            <h5>INOCULUM CALCULATIONS (connection with 2nd module)</h5><br>
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                            <h2>Protease production</h2><br>
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                            <h3>OVERVIEW ( overall picture) </h3>
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                            <p>Well known for extracellular protease production[1], Bacillus subtilis is our model organism for the proof of concept experiments. Moreover,
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                                it is a gram-positive bacteria which even if not too close but is closer than e coli (gram-negative) to our proposed bacteria lactobacillus
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                                Acidophilus. This module deals with the whole mechanism of action ideally the GMO must follow for contraception to be attained. To know how
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                            this module developed to what it is, please refer to the engineering success (hyperlink).</p>
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                            <p>Let's create the flow, you must know by now that we plan to produce the protease known as ovastacin,
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                                an indigenous protease[2] to the human ovum. It is known to cause Zona pellucida hardening naturally
+
                                used by the ovum to prevent polyspermy[3]. To see the mechanism of zona pellucida hardening click here
+
                                (goes to project overview where it is explained).</p>
+
                           
+
                           
+
                            <h5> 1] Total amount of ovastacin required: </h5>
+
                           
+
                            <p>[We assume one active ovastacin cleaves one ZP2 glycoprotein present in the Zona pellucida matrix. To get the number of molecules of ovastacin needed, we calculated the number of ZP2 glycoproteins present on the surface of the ovum. For this, we reached out to studies that looked at the thickness of the ovum with and without the zona pellucida layer to find its overall thickness and the radius of the ovum[4]. </p>
+
                            <br>
+
                            <h6>Constants and calculations:</h6><br>
+
                             <div class="table-responsive-md">
+
                                 <table class="table">
+
                                    <thead>
+
                                        <tr>
+
                                          <th>Parameter (need alternative) </th>
+
                                          <th>Value</th>
+
                                          <th>References</th>
+
                                        </tr>
+
                                     </thead>
+
                                    <tbody>
+
                                         <tr>
+
                                          <td>Zona pellucida thickness</td>
+
                                          <td>18.9 μm</td>
+
                                          <td>Does zona pellucida thickness influence the fertilization rate? E. Bertrand1 , M.Van Den Bergh and Y.Englert</td>
+
                                        </tr>
+
                                        <tr>
+
                                          <td>Oocyte diameter</td>
+
                                          <td>123.5 μm</td>
+
                                          <td>Does zona pellucida thickness influence the fertilization rate? E. Bertrand1 , M.Van Den Bergh and Y.Englert</td>
+
                                        </tr>
+
                                        <tr>
+
                                          <td>Size of ZP2</td>
+
                                          <td>90–110 kDa</td>
+
                                          <td>Characterization of human zona pellucida glycoproteins A R Bauskin 1, D R Franken, U Eberspaecher, P Donner DOI: 10.1093/molehr/5.6.534</td>
+
                                        </tr>
+
                                        <tr>
+
                                          <td>Diameter of ZP2r</td>
+
                                          <td>0.0092 μm</td>
+
                                          <td>Zetasizer Nano Sensitivity Calculator (Classic)</td>
+
                                         </tr>
+
                                    </tbody>
+
                                </table>
+
                            </div>                           
+
                            <p>Assuming cuboid with all spheres of size same as ZP2 to
+
                            get volume of one unit = 3.1 e-6 μm3 </p>
+
                            <p>Volume occupied by whole ZP matrix = 12.4 e5 μm3 </p>
+
                            <p>Calculated the number of ZP2 glycoproteins present in the ZP matrix = 3.92 x 1011 molecules</p>
+
                            <p>Assuming 1 ovastacin cleaves 1 ZP2</p>
+
                            <p>No. of ovastacin = No. of ZP2 = 12.4 e5 / 3.1 e-6 = 3.92 x 1011  molecules ]</p>
+
                            <p>In order to cause complete hardening __ number of molecules are required to reach the ovum. The next question that arises is how much is produced and how much of produced ovastacin will reach the ovum. So we have two major things left to look at: </p>
+
                            <h5>2] Production and transport of ovastacin by GMO</h5>  
+
                            <p>The production of ovastacin is required for three days pre and post ovulation, please go to “Genetic Circuits” to learn details regarding the genetic circuit. </p> 
+
                            <h4>GENETIC CIRCUIT</h4>
+
                            <p>Progesterone repressible system</p>
+
                            <h4>JOURNEY OF OVASTACIN</h4>
+
                            <p>From the papers, we know that the ovum is propelled by the ciliary motion away from the uterus and that means the ovum is in contact with the wall. Thesize ampulla region of the Fallopian tube (2.5 mm ≤ radius ≤ 5 mm ) is much larger than the radius of the ovum (61.7μm) A molecule under the influence of Brownian motion move according to the equation</p>
+
                            <ul>
+
                                <li>< r <sup>2</sup> >= 4Dt (for 2-D)</li>
+
                                <li>< r <sup>2</sup> >= 6Dt (for 3-D)</li>
+
                                <p>Where,</p>
+
                                <li>< r <sup>2</sup>  > → mean squared (radial) distance travelled by the molecule</li>
+
                                <p>using,</p>
+
                                <ol>
+
                                    <li>k<sub>B</sub> = 1.38064852 ×10<sup>23</sup>  m<sup>2</sup> kg<sup>-2</sup> s<sup>-1</sup> K  [Boltzmann constant]</li>
+
                                    <li>η = 0.799 Pa·s [Viscosity of Oviductal Fluid]</li>
+
                                    <li>T = 35.5 + 273.15 = 308.65 K [Temperature of Oviduct]</li>
+
                                    <li>r = 22kDa = 2.43 nm [Radius of ovastacin molecule]</li>
+
                                    <li>a = 61.7 μm [Radius of the ovum]</li>
+
                                    <li>s = 5 mm [Radius of the ampulla region of the oviduct]</li>
+
                                    <li>N<sub>0</sub> = 3.92 ×10<sup>11</sup> molecules = 0.000650946529392 nanomoles [Number of ovastacin to react with all ZP2]</li>
+
                                     <p>
+
                                        For, Ovastacin D=1.1644194699 ×10<sup>-13</sup>  m<sup>2</sup> s<sup>-1</sup>
+
                                        </p>
+
                                 </ol>
+
                                <li>t → Time elapsed</li>
+
               
+
                            </ul>
+
 
                     </div>
 
                     </div>
                </div>
+
 
                <div class="card d-none d-md-block" style="max-width: 18rem;width: 25%; border: none !important;" id="index">
+
                    <div class="col-md-8 p-5">
                    <div class="card-body">
+
                        <p id="1" class="py-5"></p>
                      <h5 class="card-title">INDEX</h5>
+
                        <h2>END USERS&nbsp;</h2>
                      <h6 class="card-subtitle mb-2 text-muted">Card subtitle</h6>
+
                        <h3>Uterus owners</h3>
                      <p class="card-text">Some quick example text to build on the card title and make up the bulk of the card's content.</p>
+
                        <p>The end-users of OviCloak are proposed to be sexually active uterus owners. OviCloak will be optimal for uterus owners as it is non-hormonal and mimics a natural process to block fertilization. It doesn&rsquo;t act on their body, but only on the gamete and due to this specific targeting, there will be minimal side effects on the body of the uterus owner with the benefits of long term contraception and reversibility.&nbsp;</p>
                      <a href="#" class="card-link">Card link</a>
+
                       
                      <a href="#" class="card-link">Another link</a>
+
                        <h3>Gynecologists and IVF Specialists&nbsp;</h3>
                      <ul>
+
                       
                          <li><a href="#waste1">waste 1</a></li>
+
                        <p>The best place for implementation of OviCloak is going to be in a hospital or clinic. The chosen technique for delivery of the genetically modified organism is hysteroscopy, which is a standard procedure known to healthcare professionals working in the Gynecology and Obstetrics field and IVF.</p>
                          <li><a href="#waste2">waste 2</a></li>
+
                       
                          <li><a href="#waste3">waste 3</a></li>
+
                        <figure class="col-12 col-md-8 p-5 m-auto">
                          <li><a href="#waste4">waste 4</a></li>
+
                            <img src="./assets/c3p2 (1).svg" alt="Trulli" style="width:100%">
                          <li><a href="#waste1">waste 1</a></li>
+
                            <figcaption>Fig 1 : Stakeholders of OviCloak - Uterus owners(left) , Gynecologists (right)</figcaption>
                          <li><a href="#waste2">waste 2</a></li>
+
                        </figure>
                          <li><a href="#waste3">waste 3</a></li>
+
 
                          <li><a href="#waste4">waste 4</a></li>
+
                        <p id="2" class="py-5"></p>                       
                          <li><a href="#waste1">waste 1</a></li>
+
                        <h2>IMPLEMENTATION IN THE REAL WORLD</h2>
                          <li><a href="#waste2">waste 2</a></li>
+
                       
                          <li><a href="#waste3">waste 3</a></li>
+
                        <p>While designing OviCloak, the biggest challenge we were facing was to find a way to introduce the bacteria to the fallopian tubes. As a part of our Human Practices, our interactions with various experts in the field introduced us to an existing and commonly used method in hospitals and clinics called Hysteroscopy.&nbsp;</p>                       
                          <li><a href="#waste4">waste 4</a></li>
+
                        <p>The Hysteroscopy method is commonly used in gynecology and IVF Fields and is a safe, effective, and non-invasive method compared to conventional gynecological procedures. [1]&nbsp;</p>
                      </ul>
+
                        <p>For implementing OviCloak in the real world, we decided to deliver the genetically modified bacteria with Hysteroscopy. Due to the various problems associated with devices that stay inside the uterus, we didn&rsquo;t want to develop a new device that will be retained in the uterus of the user, and thus, the<strong> method of hysteroscopy is ideal for OviCloak</strong>.&nbsp;</p>                       
 +
                        <p>Hysteroscopy is done with medical assistance and requires constant X-Ray monitoring to ensure that the catheter is inserted without any issues. This is due to the fact that the Ostia and the Fallopian tube are dynamic structures and that there is no chemical or significant physical difference between the ampulla and the other components of the Fallopian tube.</p>                        <p>As advised and recommended by an IVF specialist, the diameter of the Hysteroscope used will be about 2.9 mm and it further narrows for the part that enters the Fallopian Tube. The <strong>volume of the Hysteroscope is about 2-3mL</strong>. We&rsquo;ll use air as our pushing entity to inject 0.1 mL oil or a saline solution containing the genetically modified bacteria. Oil is USG opaque which helps in guidance for the injection of the droplet.</p>
 +
                        <p>A solution of genetically modified bacteria of a specific concentration will be prepared. Then, the catheter will be inserted under medical guidance up to the ampulla. An injector is projected with narrow long incisions on both sides of it, which ensures that the genetically modified bacteria form a ring along the circumference of the fallopian tube.&nbsp;</p>
 +
                        <figure class="col-12 col-md-8 p-5 m-auto">
 +
                            <img src="./assets/c3p2 (1).svg" alt="Trulli" style="width:100%">
 +
                            <figcaption>Fig 2: Diagramatic representation of hysteroscopy</figcaption>
 +
                        </figure>
 +
                        <p>Figure 2: Diagramatic representation of hysteroscopy</p>
 +
                        <p>Our team chose this procedure to bring OviCloak into reality as this allows the doctor to directly inject fluids in the fallopian tube compared to other procedures. As this standard procedure is in regular practice by healthcare professionals, it will aid in OviCloak&rsquo;s implementation in the real world.&nbsp;</p>
 +
                       
 +
                        <p>Some additional points of implementation from our human practices:-&nbsp;</p>
 +
                       
 +
                        <p>(i) Talking with gynecologists, we realized that many uterus owners opt for long-term and reversible contraception right after parturition. In such cases, as the user will already be in a hospital setting during parturition, OviCloak can be administered easily.</p>
 +
                       
 +
                        <p>(ii) While performing hysteroscopy on individuals belonging to the transmasculine spectrum, (especially those on hormone replacement therapy), a smaller size speculum [3] is suggested to be used by the gynecologist.&nbsp;</p>
 +
                       
 +
                        <p>(iii) When administrating the contraceptive for individuals belonging to the intersex spectrum, special care should be taken so that the Genetically modified bacteria does not go in the urinary bladder, instead of the uterus. Performing a procedure like a hysteroscopy on intersex individuals requires more precision on the healthcare professional&rsquo;s part to make sure that the bacteria reach the fallopian tubes.&nbsp;</p>
 +
                       
 +
                        <h3>Storage and packaging&nbsp;</h3>
 +
                       
 +
                        <p>The <em>Lactobacillus </em>species have been shown to be stably maintained at 4&deg;C for 24 months. The bacteria can even stay stable at 22&deg;C (room temperature) for up to 4 weeks. [2]</p>
 +
                        <p>&nbsp;Most of the hospitals or clinics have a 4&deg;C refrigerator available and thus, they will be able to store the Genetically modified organism and administer doses to several uterus owners for a long time. Thus, there is no additional cost of storage of the genetically modified organism on part of the hospitals.&nbsp;</p>
 +
                       
 +
                        <p>Through our Model, we were able to calculate a rough estimate of the initial inoculum of the genetically modified bacteria that will be required. The initial inoculum of bacteria that will be administered in the fallopian tube should be about ___ which will have an OD_600 or CFU of about ___.</p>
 +
                       
 +
                        <p>The vials for packaging of the genetically modified organism should be amber-colored or black. This is due to the fact that our Genetically modified bacteria have a light-inducible kill switch for biosafety and thus, they should not be exposed to visible light conditions.&nbsp;</p>
 +
                       
 +
                        <figure class="col-12 col-md-8 p-5 m-auto">
 +
                            <img src="./assets/c3p2 (1).svg" alt="Trulli" style="width:100%">
 +
                            <figcaption>Fig 3 : Diagramatic representation of packaging and storage of OviCloak. The GMO will be stored in dark vials at 4&deg;C and administered into the uterus using hysteroscope.</figcaption>
 +
                        </figure>
 +
                        <p>&nbsp;</p>
 +
                       
 +
                        <p>These guidelines for packaging will also take care of the fact that our product is not communicated in a way that makes it implied for any particular gender. This non-hormonal method can cater to the needs of all people with a uterus and this should be maintained.&nbsp;</p>
 +
                       
 +
                        <p>Specific protocols for delivery of OviCloak using hysteroscopy can be developed once the safety of OviCloak has been established and when it goes into the clinical trials stage.&nbsp;</p>
 +
                       
 +
                        <h3>Implementation in Public Sector&nbsp;</h3>
 +
                       
 +
                        <p>During our discussion with the Contraceptive Technology Innovation (CTI) Exchange, a global contraceptive research platform funded by Bill and Melinda Gates Foundation, we came to know about the different procurement agencies that interact with the manufacturers of contraceptives and procure contraceptives for NGOs and National governments.&nbsp;</p>
 +
                       
 +
                        <p>Once these procurement agencies are convinced about the viability and importance of the product, they recommend the governments go forward with it and implement it on a large scale. The national governments and NGOs go ahead and distribute contraceptive products with the help of a third party.</p>
 +
                       
 +
                        <p>With respect to OviCloak, a similar strategy will be applied for accessibility of the contraceptive around the world.&nbsp;</p>
 +
                       
 +
                        <p>Our country India was one of the first countries to initiate nationwide family planning programs around the 1950s. Now, India has an extensive network of family planning through various schemes. Most contraceptives in remote corners of India are available in local clinics and hospitals at subsidized rates and can be availed with the help of national schemes. Procedures like hysteroscopy are performed on a regular basis for free or with minimal costs in government hospitals across the nation.</p>
 +
                       
 +
                        <h3>Implementation in Private Sector&nbsp;</h3>
 +
                        <p>It is quite expensive to perform hysteroscopy in a private hospital.&nbsp;</p>
 +
                       
 +
                        <p id="3">In India, due to the lack of healthcare facilities in the public sector, many individuals from metropolitan cities prefer private healthcare facilities.&nbsp;</p>
 +
                        <p>With good health care insurance on the user&rsquo;s part that covers contraception, the implementation of OviCloak in the private sector can also happen smoothly.</p>
 +
                       
 +
                        <h2>SAFETY ASPECTS&nbsp;</h2>
 +
                       
 +
                        <p><strong>While implementing OviCloak, the following safety aspects need to be considered:-&nbsp;</strong></p>
 +
                       
 +
                       
 +
                        <ul>
 +
                        <li><strong>Biosafety: While developing any genetically modified organism, the most important factor is the safety of the environment. As the uterine and fallopian tube environment is a dynamic one, there are chances of the bacteria flushing out of the system. For such a scenario, we have engineered the bacteria with visible light (<strong> 450-500 nm) </strong>inducible kill switch, which will kill the genetically modified bacteria in the outside environment.&nbsp;</strong></li>
 +
                        </ul>
 +
                        <ul>
 +
                        <li>The modified bacteria will be commensal, so ideally the risk should be minimal. However, as it is a novel technique to introduce the bacteria to the fallopian tubes, there can be unknown complications that can arise due to a genetically modified organism being introduced into that environment. Hence, in order to investigate the effect of the GMO on the microbiome of the fallopian tube, comprehensive <em>in vivo</em> studies will be required.&nbsp;</li>
 +
                        </ul>
 +
                       
 +
                        <ul>
 +
                        <ul>
 +
                        <li>Ethnicity, race, etc</li>
 +
                        </ul>
 +
                        </ul>
 +
                       
 +
                        <ul>
 +
                        <li><strong>Different comorbidity factors like diabetes, obesity, previous drug abuse, and future plans of pregnancy have to be kept in mind while administering this contraceptive. There will be designing of experiments where each of the factors are tested independently and then correlated with other factors. Theoretically, the above-mentioned external factors will NOT be weighing too heavily on the real-life implementation, but these factors play a crucial role in the safety of the user.&nbsp;</strong></li>
 +
                        </ul>
 +
                        <ul>
 +
                        <li>Another safety factor to be kept in mind while implementing OviCloak is Horizontal Gene transfer with other commensal bacteria residing in the system. To tackle this, we have preferred genome integration for genetically modifying the organism. This reduces the chance of HGT drastically.&nbsp;</li>
 +
                        </ul>
 +
                        <ul>
 +
                        <li id="4">Due to specific targeting of the contraceptive, there will be almost NO hormonal disbalance. This will reduce the secondary side effects that we usually see in normal birth control pills, IUDs, and other synthetically made contraceptives.</li>
 +
                        </ul>
 +
                       
 +
                       
 +
                        <p><strong>To know more, see </strong><strong>Safety. </strong></p>
 +
                        <h2>CHALLENGES&nbsp;</h2>
 +
                       
 +
                        <p>There are numerous challenges that can be faced while implementing a solution like OviCloak. Some of them are:-&nbsp;</p>
 +
                       
 +
                        <ul>
 +
                        <li>In many cultures, contraception is still viewed as taboo. This can hinder sexually active uterus owners in need of non-hormonal, long-term, and reversible contraception to access OviCloak. Another challenge is the lack of awareness that is rampant in&nbsp;</li>
 +
                        <li>After the COVID-19 pandemic, there is a general fear of microorganisms in people&rsquo;s minds and thus, OviCloak being a genetically modified microorganism might make it difficult for people to accept this solution to contraceptives&nbsp;</li>
 +
                        <li>The hysteroscopic method, though being a common gynecological procedure, might not be available in the remote corners of India. This may hinder people from rural backgrounds from having access to OviCloak.&nbsp;</li>
 +
                        <li>The distribution of OviCloak can be difficult as a cold chain needs to be maintained while transporting the bacteria. Any breaks in the cold chains can lead to decreased viability of the genetically engineered bacteria. Thus, the distribution of OviCloak, especially over long distances can be challenging.&nbsp;</li>
 +
                        <li>Due to the factors stated above, human clinical trials and follow up might be difficult to carry out properly and thus, a credible proof of concept for humans can be challenging to show.&nbsp;</li>
 +
                        <li>Due to the stigma around intersex individuals and transphobia, finding queer affirmative healthcare professionals who are trained to perform surgeries on the transmasculine and intersex community can be challenging for individuals around the world.</li>
 +
                        <li id="5">As OviCloak is a novel approach to contraception as well as the introduction of Genetically modified organisms to the fallopian tube of uterus owners. There is a lack of studies on how a Genetically modified organism interacts with the human body, which can make the implementation of OviCloak challenging.&nbsp;</li>
 +
                        </ul>
 +
                       
 +
                        <h2>CONCLUSION</h2>
 +
                        <p>OviCloak is a modern-era contraceptive with the least side effects and large-scale availability. It is a novel technique and thus, its implementation in the world will be unique as well as challenging. By merging our contraception with an already existing and commonly practiced procedure in hospitals, we have taken the first step in implementing this contraceptive in the real world in a best-suited way. When it comes to packaging and storage, due to the stability of <em>Lactobacillus</em> at 4&deg;C for a long time, there will be no additional cost of storage of OviCloak in hospitals. Due to the well-established systems of large-scale contraception procurements and distribution, OviCloak can reach the public and be accessible to uterus owners all around.&nbsp;</p>
 +
                       
 +
                        <p id="6">Several safety aspects are associated with the implementation of OviCloak in the real world ranging from environmental contamination to the physical health and priorities of the user. Along with them, many challenges such as availability of equipment, social stigma, distribution, and non-availability of healthcare professionals have to be addressed and overcome to implement OviCloak successfully.&nbsp;</p>
 +
                        <p>Summing up, OviCloak which is a novel contraceptive for uterus owners has a great potential to be implemented in the real world and bring about a positive change for the health and well-being of uterus owners.&nbsp;</p>
 +
                       
 +
                        <h3>References:-&nbsp;</h3>
 +
                       
 +
                        <ul>
 +
                            <li>Fard, S. A., Gharabaghi, P. M., Montazeri, F., &amp; Mashrabi, O. (2012). Hysteroscopy as a minimally invasive surgery, a good substitute for invasive gynecological procedures. <em>Iranian journal of reproductive medicine</em>, <em>10</em>(4), 377.</li>
 +
                            <li>Rerksuppaphol, S., &amp; Rerksuppaphol, L. (2010). Lactobacillus acidophilus and Bifidobacterium bifidum stored at ambient temperature are effective in the treatment of acute diarrhoea. <em>Annals of tropical paediatrics</em>, <em>30</em>(4), 299-304</li>
 +
                            <li>Krempasky, C., Harris, M., Abern, L., &amp; Grimstad, F. (2020). Contraception across the transmasculine spectrum. <em>American journal of obstetrics and gynecology</em>,<em>222</em>(2), 134-143.</li>
 +
                            <li>Moore, J. F., &amp; Carugno, J. (2020). Hysteroscopy. StatPearls [Internet].</li>
 +
                        </ul>
 +
                       
 
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Revision as of 10:52, 15 October 2021


Ovi-Cloak

SCROLL

END USERS 

Uterus owners

The end-users of OviCloak are proposed to be sexually active uterus owners. OviCloak will be optimal for uterus owners as it is non-hormonal and mimics a natural process to block fertilization. It doesn’t act on their body, but only on the gamete and due to this specific targeting, there will be minimal side effects on the body of the uterus owner with the benefits of long term contraception and reversibility. 

Gynecologists and IVF Specialists 

The best place for implementation of OviCloak is going to be in a hospital or clinic. The chosen technique for delivery of the genetically modified organism is hysteroscopy, which is a standard procedure known to healthcare professionals working in the Gynecology and Obstetrics field and IVF.

Trulli
Fig 1 : Stakeholders of OviCloak - Uterus owners(left) , Gynecologists (right)

IMPLEMENTATION IN THE REAL WORLD

While designing OviCloak, the biggest challenge we were facing was to find a way to introduce the bacteria to the fallopian tubes. As a part of our Human Practices, our interactions with various experts in the field introduced us to an existing and commonly used method in hospitals and clinics called Hysteroscopy. 

The Hysteroscopy method is commonly used in gynecology and IVF Fields and is a safe, effective, and non-invasive method compared to conventional gynecological procedures. [1] 

For implementing OviCloak in the real world, we decided to deliver the genetically modified bacteria with Hysteroscopy. Due to the various problems associated with devices that stay inside the uterus, we didn’t want to develop a new device that will be retained in the uterus of the user, and thus, the method of hysteroscopy is ideal for OviCloak

Hysteroscopy is done with medical assistance and requires constant X-Ray monitoring to ensure that the catheter is inserted without any issues. This is due to the fact that the Ostia and the Fallopian tube are dynamic structures and that there is no chemical or significant physical difference between the ampulla and the other components of the Fallopian tube.

As advised and recommended by an IVF specialist, the diameter of the Hysteroscope used will be about 2.9 mm and it further narrows for the part that enters the Fallopian Tube. The volume of the Hysteroscope is about 2-3mL. We’ll use air as our pushing entity to inject 0.1 mL oil or a saline solution containing the genetically modified bacteria. Oil is USG opaque which helps in guidance for the injection of the droplet.

A solution of genetically modified bacteria of a specific concentration will be prepared. Then, the catheter will be inserted under medical guidance up to the ampulla. An injector is projected with narrow long incisions on both sides of it, which ensures that the genetically modified bacteria form a ring along the circumference of the fallopian tube. 

Trulli
Fig 2: Diagramatic representation of hysteroscopy

Figure 2: Diagramatic representation of hysteroscopy

Our team chose this procedure to bring OviCloak into reality as this allows the doctor to directly inject fluids in the fallopian tube compared to other procedures. As this standard procedure is in regular practice by healthcare professionals, it will aid in OviCloak’s implementation in the real world. 

Some additional points of implementation from our human practices:- 

(i) Talking with gynecologists, we realized that many uterus owners opt for long-term and reversible contraception right after parturition. In such cases, as the user will already be in a hospital setting during parturition, OviCloak can be administered easily.

(ii) While performing hysteroscopy on individuals belonging to the transmasculine spectrum, (especially those on hormone replacement therapy), a smaller size speculum [3] is suggested to be used by the gynecologist. 

(iii) When administrating the contraceptive for individuals belonging to the intersex spectrum, special care should be taken so that the Genetically modified bacteria does not go in the urinary bladder, instead of the uterus. Performing a procedure like a hysteroscopy on intersex individuals requires more precision on the healthcare professional’s part to make sure that the bacteria reach the fallopian tubes. 

Storage and packaging 

The Lactobacillus species have been shown to be stably maintained at 4°C for 24 months. The bacteria can even stay stable at 22°C (room temperature) for up to 4 weeks. [2]

 Most of the hospitals or clinics have a 4°C refrigerator available and thus, they will be able to store the Genetically modified organism and administer doses to several uterus owners for a long time. Thus, there is no additional cost of storage of the genetically modified organism on part of the hospitals. 

Through our Model, we were able to calculate a rough estimate of the initial inoculum of the genetically modified bacteria that will be required. The initial inoculum of bacteria that will be administered in the fallopian tube should be about ___ which will have an OD_600 or CFU of about ___.

The vials for packaging of the genetically modified organism should be amber-colored or black. This is due to the fact that our Genetically modified bacteria have a light-inducible kill switch for biosafety and thus, they should not be exposed to visible light conditions. 

Trulli
Fig 3 : Diagramatic representation of packaging and storage of OviCloak. The GMO will be stored in dark vials at 4°C and administered into the uterus using hysteroscope.

 

These guidelines for packaging will also take care of the fact that our product is not communicated in a way that makes it implied for any particular gender. This non-hormonal method can cater to the needs of all people with a uterus and this should be maintained. 

Specific protocols for delivery of OviCloak using hysteroscopy can be developed once the safety of OviCloak has been established and when it goes into the clinical trials stage. 

Implementation in Public Sector 

During our discussion with the Contraceptive Technology Innovation (CTI) Exchange, a global contraceptive research platform funded by Bill and Melinda Gates Foundation, we came to know about the different procurement agencies that interact with the manufacturers of contraceptives and procure contraceptives for NGOs and National governments. 

Once these procurement agencies are convinced about the viability and importance of the product, they recommend the governments go forward with it and implement it on a large scale. The national governments and NGOs go ahead and distribute contraceptive products with the help of a third party.

With respect to OviCloak, a similar strategy will be applied for accessibility of the contraceptive around the world. 

Our country India was one of the first countries to initiate nationwide family planning programs around the 1950s. Now, India has an extensive network of family planning through various schemes. Most contraceptives in remote corners of India are available in local clinics and hospitals at subsidized rates and can be availed with the help of national schemes. Procedures like hysteroscopy are performed on a regular basis for free or with minimal costs in government hospitals across the nation.

Implementation in Private Sector 

It is quite expensive to perform hysteroscopy in a private hospital. 

In India, due to the lack of healthcare facilities in the public sector, many individuals from metropolitan cities prefer private healthcare facilities. 

With good health care insurance on the user’s part that covers contraception, the implementation of OviCloak in the private sector can also happen smoothly.

SAFETY ASPECTS 

While implementing OviCloak, the following safety aspects need to be considered:- 

  • Biosafety: While developing any genetically modified organism, the most important factor is the safety of the environment. As the uterine and fallopian tube environment is a dynamic one, there are chances of the bacteria flushing out of the system. For such a scenario, we have engineered the bacteria with visible light ( 450-500 nm) inducible kill switch, which will kill the genetically modified bacteria in the outside environment. 
  • The modified bacteria will be commensal, so ideally the risk should be minimal. However, as it is a novel technique to introduce the bacteria to the fallopian tubes, there can be unknown complications that can arise due to a genetically modified organism being introduced into that environment. Hence, in order to investigate the effect of the GMO on the microbiome of the fallopian tube, comprehensive in vivo studies will be required. 
    • Ethnicity, race, etc
  • Different comorbidity factors like diabetes, obesity, previous drug abuse, and future plans of pregnancy have to be kept in mind while administering this contraceptive. There will be designing of experiments where each of the factors are tested independently and then correlated with other factors. Theoretically, the above-mentioned external factors will NOT be weighing too heavily on the real-life implementation, but these factors play a crucial role in the safety of the user. 
  • Another safety factor to be kept in mind while implementing OviCloak is Horizontal Gene transfer with other commensal bacteria residing in the system. To tackle this, we have preferred genome integration for genetically modifying the organism. This reduces the chance of HGT drastically. 
  • Due to specific targeting of the contraceptive, there will be almost NO hormonal disbalance. This will reduce the secondary side effects that we usually see in normal birth control pills, IUDs, and other synthetically made contraceptives.

To know more, see Safety.

CHALLENGES 

There are numerous challenges that can be faced while implementing a solution like OviCloak. Some of them are:- 

  • In many cultures, contraception is still viewed as taboo. This can hinder sexually active uterus owners in need of non-hormonal, long-term, and reversible contraception to access OviCloak. Another challenge is the lack of awareness that is rampant in 
  • After the COVID-19 pandemic, there is a general fear of microorganisms in people’s minds and thus, OviCloak being a genetically modified microorganism might make it difficult for people to accept this solution to contraceptives 
  • The hysteroscopic method, though being a common gynecological procedure, might not be available in the remote corners of India. This may hinder people from rural backgrounds from having access to OviCloak. 
  • The distribution of OviCloak can be difficult as a cold chain needs to be maintained while transporting the bacteria. Any breaks in the cold chains can lead to decreased viability of the genetically engineered bacteria. Thus, the distribution of OviCloak, especially over long distances can be challenging. 
  • Due to the factors stated above, human clinical trials and follow up might be difficult to carry out properly and thus, a credible proof of concept for humans can be challenging to show. 
  • Due to the stigma around intersex individuals and transphobia, finding queer affirmative healthcare professionals who are trained to perform surgeries on the transmasculine and intersex community can be challenging for individuals around the world.
  • As OviCloak is a novel approach to contraception as well as the introduction of Genetically modified organisms to the fallopian tube of uterus owners. There is a lack of studies on how a Genetically modified organism interacts with the human body, which can make the implementation of OviCloak challenging. 

CONCLUSION

OviCloak is a modern-era contraceptive with the least side effects and large-scale availability. It is a novel technique and thus, its implementation in the world will be unique as well as challenging. By merging our contraception with an already existing and commonly practiced procedure in hospitals, we have taken the first step in implementing this contraceptive in the real world in a best-suited way. When it comes to packaging and storage, due to the stability of Lactobacillus at 4°C for a long time, there will be no additional cost of storage of OviCloak in hospitals. Due to the well-established systems of large-scale contraception procurements and distribution, OviCloak can reach the public and be accessible to uterus owners all around. 

Several safety aspects are associated with the implementation of OviCloak in the real world ranging from environmental contamination to the physical health and priorities of the user. Along with them, many challenges such as availability of equipment, social stigma, distribution, and non-availability of healthcare professionals have to be addressed and overcome to implement OviCloak successfully. 

Summing up, OviCloak which is a novel contraceptive for uterus owners has a great potential to be implemented in the real world and bring about a positive change for the health and well-being of uterus owners. 

References:- 

  • Fard, S. A., Gharabaghi, P. M., Montazeri, F., & Mashrabi, O. (2012). Hysteroscopy as a minimally invasive surgery, a good substitute for invasive gynecological procedures. Iranian journal of reproductive medicine, 10(4), 377.
  • Rerksuppaphol, S., & Rerksuppaphol, L. (2010). Lactobacillus acidophilus and Bifidobacterium bifidum stored at ambient temperature are effective in the treatment of acute diarrhoea. Annals of tropical paediatrics, 30(4), 299-304
  • Krempasky, C., Harris, M., Abern, L., & Grimstad, F. (2020). Contraception across the transmasculine spectrum. American journal of obstetrics and gynecology,222(2), 134-143.
  • Moore, J. F., & Carugno, J. (2020). Hysteroscopy. StatPearls [Internet].
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