Difference between revisions of "Team:Stockholm/Model"

(Prototype team page)
 
Line 1: Line 1:
{{IGEM_TopBar}}
+
<!-- # TODO: #6 Fix table caption font--><!-- # TODO: #7 Fix citations links font size--><html lang="en"><head><meta charset="utf-8"/><meta content="width=device-width,initial-scale=1" name="viewport"/><title>Model | iGEM Stockholm</title><script src="https://2020.igem.org/common/MathJax-2.5-latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script><link href="https://2021.igem.org/Template:Stockholm/css/contentCSS?action=raw&amp;ctype=text/css" rel="stylesheet"/></head><body><!-- # TODO: #6 Fix table caption font--><!-- # TODO: #7 Fix citations links font size--><nav class="navbar navbar-expand-xl fixed-top"><div class="container d-flex justify-content-between"><a class="navbar-brand d-lg-inline-block" href="https://2021.igem.org/Team:Stockholm"></a><button aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation" class="navbar-toggler" data-target="#navbarNav" data-toggle="collapse" type="button"><span class="navbar-toggler-icon"></span></button><div class="collapse navbar-collapse" id="navbarNav"><ul class="navbar-nav ml-auto"><li class="nav-item"><a class="nav-link" href="https://2021.igem.org/Team:Stockholm/Sample">Sample</a></li><li class="nav-item dropdown"><a aria-expanded="false" aria-haspopup="true" class="nav-link dropdown-toggle" data-toggle="dropdown" href="#" id="navbarTeamDropdown" role="button">Team</a><div aria-labelledby="navbarTeamDropdown" class="dropdown-menu"><a class="dropdown-item" href="https://2021.igem.org/Team:Stockholm/Team">Team</a><a class="dropdown-item" href="https://2021.igem.org/Team:Stockholm/Attributions">Attributions</a><a class="dropdown-item" href="https://2021.igem.org/Team:Stockholm/Collaborations">Collaborations</a><a class="dropdown-item" href="https://2021.igem.org/Team:Stockholm/Inclusion">Inclusion</a></div></li><li class="nav-item dropdown"><a aria-expanded="false" aria-haspopup="true" class="nav-link dropdown-toggle" data-toggle="dropdown" href="#" id="navbarProjectDropdown" role="button">Project</a><div aria-labelledby="navbarProjectDropdown" class="dropdown-menu"><a class="dropdown-item" href="https://2021.igem.org/Team:Stockholm/Contribution">Contribution</a><a class="dropdown-item" href="https://2021.igem.org/Team:Stockholm/Description">Description</a><a class="dropdown-item" href="https://2021.igem.org/Team:Stockholm/Design">Design</a><a class="dropdown-item" href="https://2021.igem.org/Team:Stockholm/Engineering">Engineering</a><a class="dropdown-item" href="https://2021.igem.org/Team:Stockholm/Experiments">Experiments</a><a class="dropdown-item" href="https://2021.igem.org/Team:Stockholm/Notebook">Notebook</a><a class="dropdown-item" href="https://2021.igem.org/Team:Stockholm/Partnership">Partnership</a><a class="dropdown-item" href="https://2021.igem.org/Team:Stockholm/Proof_Of_Concept">Proof Of Concept</a><a class="dropdown-item" href="https://2021.igem.org/Team:Stockholm/Results">Results</a></div></li><li class="nav-item dropdown"><a aria-expanded="false" aria-haspopup="true" class="nav-link dropdown-toggle" data-toggle="dropdown" href="#" id="navbarPartsDropdown" role="button">Parts</a><div aria-labelledby="navbarPartsDropdown" class="dropdown-menu"><a class="dropdown-item" href="https://2021.igem.org/Team:Stockholm/Part_Collection">Part Collection</a><a class="dropdown-item" href="https://2021.igem.org/Team:Stockholm/Parts">Parts</a><a class="dropdown-item" href="https://2021.igem.org/Team:Stockholm/Model">Model</a><a class="dropdown-item" href="https://2021.igem.org/Team:Stockholm/Improve">Improve</a></div></li><li class="nav-item"><a class="nav-link" href="https://2021.igem.org/Team:Stockholm/Safety">Safety</a></li><li class="nav-item"><a class="nav-link" href="https://2021.igem.org/Team:Stockholm/Human_Practices">Human Practices</a></li></ul></div><div class="d-flex" id="themeSwitchWrapper"><i class="far fa-sun"></i><div id="themeSwitch"><label class="switch" for="themeSwitchInput"><input id="themeSwitchInput" type="checkbox"/><span class="slider round"></span></label></div><i class="far fa-moon"></i></div></div></nav><header class="d-flex justify-content-center align-items-center"><div class="container"><h1>Model</h1><p class="lead pl-1">A sample page for the theme.</p><hr class="my-4"/></div></header><main><div class="container"><div class="row"><div class="sidebar col-lg-3"><div class="nav" id="contents"><h5>Contents</h5><ul></ul></div></div><div class="content col-lg-9"><article><h1>Headings</h1><h2>Level 2 Heading</h2><h3>Level 3 Heading</h3><h4>Level 4 Heading</h4><h1>Emphasis</h1><p>This is regular text.</p><p><strong>This is bold text.</strong> <strong>This is also bold text.</strong></p><p><em>This is italic text.</em> _This is also italix text.*</p><p><em><strong>This text is bold and italic both.</strong></em> <em><strong>This text is bold and italic both.</strong></em></p><p><s>Strikethrough</s></p><h1>Lists</h1><ol><li>This is item one.</li><li>This is item two.</li><li>It's okay to number every item as 1.<ul><li>This is a nested list.</li><li>Use asterisk for an unordered list,</li><li>Further nesting?</li></ul><ul><li>Plus sign also works.</li></ul><ul><li>And so does minus.</li></ul></li><li><s>Birds aren't real.</s></li></ol><h1>Links</h1><p><a href="https://google.com">Google</a></p><p><a href="https://2021.igem.org/Team:Stockholm/Model/Link-goes-in-parenthesis">Text goes in square brackets</a></p><h1>Blockquote</h1><blockquote><p>This is a blockquote. This continues in the same paragraph.</p><p>To change the paragraph, you have to leave a line.</p></blockquote><blockquote><p>This is another blockquote.</p><p><strong>Pranav Ballaney, 2020</strong></p></blockquote><h1>Images</h1><p>This is a regular paragraph.</p><h4>This is a level 4 heading.</h4><p><a href="google.com">This is a link</a></p><div class="image"><img alt="Caption" src="https://static.igem.org/mediawiki/2021/9/92/T--Stockholm--img--Description--josh-withers.jpg" style="width: 100%"/><p>Figure 1: Caption</p></div><p>Back to regular text.</p><h1>Tables</h1><p>This is a regular paragraph, which precedes the table. in fact, i wanna do math here, here is mt math $$i\hbar\gamma^\mu\partial_\mu\psi = mc\psi$$ what good math When you want to insert a table, indent one level back and specify the plugin. Then indent inside again and start writing the table.</p><table><caption id="table1captiongoeshere">Table 1: Caption goes here.</caption><thead><tr><th>This is</th><th>the table</th><th>header row</th></tr></thead><tbody><tr><td>1</td><td>2</td><td>3</td></tr><tr><td>4</td><td>5</td><td>6</td></tr></tbody></table><p>And when you're done, go back to the regular markdown filter.</p><p><strong>Example 2:</strong></p><table><thead><tr><th style="text-align:left">Left aligned</th><th style="text-align:center">Center aligned</th><th style="text-align:right">Right aligned</th></tr></thead><tbody><tr><td style="text-align:left">1</td><td style="text-align:center">2</td><td style="text-align:right">3</td></tr><tr><td style="text-align:left">4</td><td style="text-align:center">5</td><td style="text-align:right">6</td></tr></tbody></table><p><strong>Example 3:</strong></p><table><caption id="table3captiongoeshere">Table 3: Caption goes here.</caption><thead><tr><th></th><th colspan="2" style="text-align:center">Grouping</th></tr><tr><th>First Header</th><th style="text-align:center">Second Header</th><th style="text-align:right">Third Header</th></tr></thead><tbody><tr><td>Content</td><td colspan="2" style="text-align:center"><em>Long Cell</em></td></tr><tr><td>Content</td><td style="text-align:center"><strong>Cell</strong></td><td style="text-align:right">Cell</td></tr><tr><td>New section</td><td style="text-align:center">More</td><td style="text-align:right"><a href="https://google.com">Data</a></td></tr><tr><td>And more</td><td colspan="2" style="text-align:center">With an escaped '|'</td></tr></tbody></table><h1>Definitions</h1><p><dfn>Term ~ Definition</dfn></p><p>This can come <dfn>anywhere in ~ the text</dfn>.</p><h1>MathJax</h1><p>$$\int_{0}^{\infty} e^{-x^2} dx = \frac{\sqrt{\pi}}{2}$$</p><p>$$-\frac{\hbar^2}{2m}\nabla^2\psi + V\psi = E\psi$$</p><p>$$i\hbar\gamma^\mu\partial_\mu\psi = mc\psi$$</p><p>$$y_k = \frac{1}{\sqrt{N}}\sum_{n=0}^{N-1}x_n\omega_N^{kn}$$</p><h1>Citations</h1><p>In text citation for a research article with a DOI. <a href="#citation2">Rosano et al., 2019</a></p><p>In text citation for another research article with a DOI. <a href="#citation1">Allen &amp; Sheridan, 2015</a></p><p>In text citation for a book with no DOI. <a href="#citation3">Ingalls, 2013</a></p><p>In text citation for a website with institutional author. <a href="#citation4">TNAU Agritech Portal, n.d.</a></p><p>In text citation for a website with an author. <a href="#citation5">Author, n.d.</a></p></article><article id="references"><h1>References</h1><ol><li id="citation1"><p class="author">Allen, M. J., &amp; Sheridan, S. C. (2015).</p><cite>Mortality risks during extreme temperature events (ETEs) using a distributed lag non-linear model.</cite><p><span class="journalTitle">International Journal of Biometeorology</span> <span class="journalInfo">62(1), 57-67.</span></p><a class="in-text" href="https://doi.org/10.1007/s00484-015-1117-4" rel="noopener" target="_blank">CrossRef</a><a class="in-text" href="https://scholar.google.com/scholar?q=Mortality risks during extreme temperature events (ETEs) using a distributed lag non-linear model." rel="noopener" target="_blank">Google Scholar</a><a class="in-text" href="#intext1">Back to text</a></li><li id="citation2"><p class="author">Rosano, A., Bella, A., Gesualdo, F., Acampora, A., Pezzotti, P., Marchetti, S., ... &amp; Rizzo, C. (2019).</p><cite>Investigating the impact of influenza on excess mortality in all ages in Italy during recent seasons (2013/14-2016/17 seasons).</cite><p><span class="journalTitle">International Journal of Infectious Diseases</span> <span class="journalInfo">88, 127-134.</span></p><a class="in-text" href="https://doi.org/10.1016/j.ijid.2019.08.003" rel="noopener" target="_blank">CrossRef</a><a class="in-text" href="https://scholar.google.com/scholar?q=Investigating the impact of influenza on excess mortality in all ages in Italy during recent seasons (2013/14-2016/17 seasons)." rel="noopener" target="_blank">Google Scholar</a><a class="in-text" href="#intext2">Back to text</a></li><li id="citation3"><p class="author">Ingalls, B. P. (2013).</p><cite>Mathematical modeling in systems biology: An introduction.</cite><p><span class="details">MIT Press.</span></p><a class="in-text" href="https://books.google.co.in/books?id=OYr6AQAAQBAJ" rel="noopener" target="_blank">Google Books</a><a class="in-text" href="#intext3">Back to text</a></li><li id="citation4"><p class="author"></p><cite>Agriculture: Crop production: Sugarcane. TNAU Agritech Portal.</cite><p><span class="details">(March 15, 2019). Retrieved on June 22, 2020. from </span><a class="in-text" href="https://google.com" rel="noopener" target="_blank">https://google.com</a></p><a class="in-text" href="#intext4">Back to text</a></li><li id="citation5"><p class="author">Author Name. (n.d.).</p><cite>Agriculture: Crop production: Sugarcane. TNAU Agritech Portal.</cite><p><span class="details">Retrieved on June 22, 2020. from </span><a class="in-text" href="https://google.com" rel="noopener" target="_blank">https://google.com</a></p><a class="in-text" href="#intext5">Back to text</a></li></ol></article></div></div></div></main><footer><div class="container"><a class="fafa" href="https://www.facebook.com/igemstockholm/" target="_blank"><i class="fab fa-facebook" style="font-size:60px;"></i></a><a class="fafa" href="https://www.facebook.com/igemstockholm/" target="_blank"><i class="fab fa-facebook" style="font-size:60px;"></i></a><a class="fafa" href="https://www.facebook.com/igemstockholm/" target="_blank"><i class="fab fa-facebook" style="font-size:60px;"></i></a><a class="fafa" href="https://www.facebook.com/igemstockholm/" target="_blank"><i class="fab fa-facebook" style="font-size:60px;"></i></a><a class="fafa" href="https://www.facebook.com/igemstockholm/" target="_blank"><i class="fab fa-facebook" style="font-size:60px;"></i></a><a class="uni-logo" href="https://ki.se" target="_blank"><img src="https://static.igem.org/mediawiki/2021/4/41/T--Stockholm--img--elsa.jpg" style="width:40px;height:40px;"/></a><p>Sample template built using the iGEM Wiki Starter Pack by BITS Goa.</p><p>Code released under the MIT license.</p><p>Based on <a href="https://getbootstrap.com">Bootstrap</a> and themes <a href="https://bootswatch.com/flatly/">Flatly</a> and <a href="https://bootswatch.com/darkly/">Darkly</a> from <a href="https://bootswatch.com/">Bootswatch</a>.</p><p>Some content from the <a href="https://2020.igem.org/Team:Example">iGEM Example Wiki</a>. Images from <a href="https://unsplash.com">Unsplash</a>. Web fonts from <a href="https://fonts.google.com">Google</a>.</p></div></footer><script src="https://2021.igem.org/Template:Stockholm/content-bundleJS?action=raw&amp;ctype=text/javascript"></script></body></html>
{{Stockholm}}
+
<html>
+
 
+
 
+
 
+
<div class="column full_size judges-will-not-evaluate">
+
<h3>★  ALERT! </h3>
+
<p>This page is used by the judges to evaluate your team for the <a href="https://2021.igem.org/Judging/Medals">medal criterion</a> or <a href="https://2021.igem.org/Judging/Awards"> award listed below</a>. </p>
+
<p> Delete this box in order to be evaluated for this medal criterion and/or award. See more information at <a href="https://2021.igem.org/Judging/Pages_for_Awards"> Instructions for Pages for awards</a>.</p>
+
</div>
+
 
+
 
+
<div class="clear"></div>
+
 
+
 
+
<div class="column full_size">
+
<h1> Modeling</h1>
+
 
+
<p>Mathematical models and computer simulations provide a great way to describe the function and operation of Parts and Devices. Synthetic Biology is an engineering discipline, and part of engineering is simulation and modeling to determine the behavior of your design before you build it. Designing and simulating can be iterated many times in a computer before moving to the lab. </p>
+
 
+
<p>Please note you can compete for both the Gold Medal criterion #3 and the Best Model prize with this page. </p>
+
 
+
</div>
+
<div class="clear"></div>
+
 
+
<div class="column full_size">
+
<h3> Gold Medal Criterion #3</h3>
+
<p>
+
Use modeling to gain insight into how your project works or should be implemented. Explain your model's assumptions, data, parameters, and results in a way that anyone could understand.
+
<br><br>
+
Please see the <a href="https://2021.igem.org/Judging/Medals">2021 Medals Page</a> for more information.
+
</p>
+
 
+
</div>
+
 
+
<div class="column two_thirds_size">
+
<h3>Best Model Special Prize</h3>
+
 
+
<p>Models and computer simulations provide a great way to describe the functioning and operation of BioBrick Parts and Devices. Synthetic biology is an engineering discipline and part of engineering is simulation and modeling to determine system behavior before building your design. Designing and simulating can be iterated many times in a computer before moving to the lab. This award is for teams who build a model of their system and use it to inform system design or simulate expected behavior before or in conjunction with experiments in the wetlab.
+
</p><p>
+
To compete for the <a href="https://2021.igem.org/Judging/Awards">Best Model prize</a>, please describe your work on this page  and also fill out the description on the <a href="https://2021.igem.org/Judging/Judging_Form">judging form</a>.
+
</p>
+
 
+
</div>
+
 
+
 
+
<div class="column third_size">
+
<div class="highlight decoration_A_full">
+
<h3> Inspiration </h3>
+
<p>You can look at what other teams did to get some inspiration! <br />
+
Here are a few examples:</p>
+
<ul>
+
<li><a href="https://2018.igem.org/Team:GreatBay_China/Model">2018 GreatBay China</a></li>
+
<li><a href="https://2018.igem.org/Team:Leiden/Model">2018 Leiden</a></li>
+
<li><a href="https://2019.igem.org/Team:IISER_Kolkata/Model">2019 IISER Kolkata</a></li>
+
<li><a href="https://2019.igem.org/Team:Exeter/Model">2019 Exeter</li>
+
<li><a href="https://2019.igem.org/Team:Mingdao/Model">2019 Mingdao</a></li>
+
<li><a href="https://2020.igem.org/Team:Harvard/Model">2020 Harvard</a></li>
+
<li><a href="https://2020.igem.org/Team:Leiden/Model">2020 Leiden</a></li>
+
</ul>
+
</div>
+
</div>
+
 
+
</html>
+

Revision as of 16:38, 10 August 2021

Model | iGEM Stockholm

Model

A sample page for the theme.


Headings

Level 2 Heading

Level 3 Heading

Level 4 Heading

Emphasis

This is regular text.

This is bold text. This is also bold text.

This is italic text. _This is also italix text.*

This text is bold and italic both. This text is bold and italic both.

Strikethrough

Lists

  1. This is item one.
  2. This is item two.
  3. It's okay to number every item as 1.
    • This is a nested list.
    • Use asterisk for an unordered list,
    • Further nesting?
    • Plus sign also works.
    • And so does minus.
  4. Birds aren't real.

Links

Google

Text goes in square brackets

Blockquote

This is a blockquote. This continues in the same paragraph.

To change the paragraph, you have to leave a line.

This is another blockquote.

Pranav Ballaney, 2020

Images

This is a regular paragraph.

This is a level 4 heading.

This is a link

Caption

Figure 1: Caption

Back to regular text.

Tables

This is a regular paragraph, which precedes the table. in fact, i wanna do math here, here is mt math $$i\hbar\gamma^\mu\partial_\mu\psi = mc\psi$$ what good math When you want to insert a table, indent one level back and specify the plugin. Then indent inside again and start writing the table.

Table 1: Caption goes here.
This isthe tableheader row
123
456

And when you're done, go back to the regular markdown filter.

Example 2:

Left alignedCenter alignedRight aligned
123
456

Example 3:

Table 3: Caption goes here.
Grouping
First HeaderSecond HeaderThird Header
ContentLong Cell
ContentCellCell
New sectionMoreData
And moreWith an escaped '|'

Definitions

Term ~ Definition

This can come anywhere in ~ the text.

MathJax

$$\int_{0}^{\infty} e^{-x^2} dx = \frac{\sqrt{\pi}}{2}$$

$$-\frac{\hbar^2}{2m}\nabla^2\psi + V\psi = E\psi$$

$$i\hbar\gamma^\mu\partial_\mu\psi = mc\psi$$

$$y_k = \frac{1}{\sqrt{N}}\sum_{n=0}^{N-1}x_n\omega_N^{kn}$$

Citations

In text citation for a research article with a DOI. Rosano et al., 2019

In text citation for another research article with a DOI. Allen & Sheridan, 2015

In text citation for a book with no DOI. Ingalls, 2013

In text citation for a website with institutional author. TNAU Agritech Portal, n.d.

In text citation for a website with an author. Author, n.d.

References

  1. Allen, M. J., & Sheridan, S. C. (2015).

    Mortality risks during extreme temperature events (ETEs) using a distributed lag non-linear model.

    International Journal of Biometeorology 62(1), 57-67.

    CrossRefGoogle ScholarBack to text
  2. Rosano, A., Bella, A., Gesualdo, F., Acampora, A., Pezzotti, P., Marchetti, S., ... & Rizzo, C. (2019).

    Investigating the impact of influenza on excess mortality in all ages in Italy during recent seasons (2013/14-2016/17 seasons).

    International Journal of Infectious Diseases 88, 127-134.

    CrossRefGoogle ScholarBack to text
  3. Ingalls, B. P. (2013).

    Mathematical modeling in systems biology: An introduction.

    MIT Press.

    Google BooksBack to text
  4. Agriculture: Crop production: Sugarcane. TNAU Agritech Portal.

    (March 15, 2019). Retrieved on June 22, 2020. from https://google.com

    Back to text
  5. Author Name. (n.d.).

    Agriculture: Crop production: Sugarcane. TNAU Agritech Portal.

    Retrieved on June 22, 2020. from https://google.com

    Back to text