Difference between revisions of "Team:Shanghai City United/Results"

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<h1>Results</h1>
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<p>You can describe the results of your project and your future plans here. </p>
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</div>
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<div class="column third_size" >
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<h3>What should this page contain?</h3>
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<ul>
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<li> Clearly and objectively describe the results of your work.</li>
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<li> Future plans for the project. </li>
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<li> Considerations for replicating the experiments. </li>
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</ul>
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</div>
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<div class="column two_thirds_size" >
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<h3>Describe what your results mean </h3>
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<ul>
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<li> Interpretation of the results obtained during your project. Don't just show a plot/figure/graph/other, tell us what you think the data means. This is an important part of your project that the judges will look for. </li>
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<li> Show data, but remember <b>all measurement and characterization data must also be on the Part's Main Page on the <a href="http://parts.igem.org/Main_Page">Registry</a>.</b> Otherwise these data will not be in consideration for any medals or part awards! </li>
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<li> Consider including an analysis summary section to discuss what your results mean. Judges like to read what you think your data means, beyond all the data you have acquired during your project. </li>
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</ul>
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</div>
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<div class="clear extra_space"></div>
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<div class="column two_thirds_size" >
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<h3> Project Achievements </h3>
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<p>You can also include a list of bullet points (and links) of the successes and failures you have had over your summer. It is a quick reference page for the judges to see what you achieved during your summer.</p>
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<ul>
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<li>A list of linked bullet points of the successful results during your project</li>
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<li>A list of linked bullet points of the unsuccessful results during your project. This is about being scientifically honest. If you worked on an area for a long time with no success, tell us so we know where you put your effort.</li>
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</ul>
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</div>
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<div class="column third_size" >
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<div class="highlight decoration_A_full">
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<h3>Inspiration</h3>
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<p>See how other teams presented their results.</p>
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<ul>
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<li><a href="https://2019.igem.org/Team:Newcastle/Results">2019 Newcastle</a></li>
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<li><a href="https://2019.igem.org/Team:Munich/Results">2019 Munich </a></li>
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<li><a href="https://2019.igem.org/Team:Tec-Chihuahua/Results">2019 Tec Chihuahua</a></li>
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<li><a href="https://2020.igem.org/Team:Aalto-Helsinki/Results">2020 Aalto Helsinki</a></li>
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<li><a href="https://2020.igem.org/Team:GreatBay_SCIE/Results">2020 GreatBay SCIE</a></li>
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<li><a href="https://2020.igem.org/Team:Queens_Canada/Results">2020 Queens Canada</a></li>
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        <div class="sub-title">Results</div>
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        <div class="img-wrap no-margin">
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            <img src="https://static.igem.org/mediawiki/2021/7/70/T--Shanghai_City_United--Results1.jpg" alt="" />
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            <span>Figure 1. electrophoregram of XynA</span>
 +
        </div>
 +
        <div class="article-content">Figure 1 is about the electrolysis of XynA. The result of electrolysis can clearly
 +
            show whether the XynA is successfully amplified. XynA was amplified by PCR. The length of XynA is 650 bp. By
 +
            compared the marker and the place of DNA, the PCR of XynA is successful.</div>
 +
        <div class="img-wrap no-margin">
 +
            <img src="https://static.igem.org/mediawiki/2021/9/90/T--Shanghai_City_United--Results2.jpg" alt="" />
 +
            <span>Figure 2. electrophoregram of pMD19-T-xynA enzyme-digested product</span>
 +
        </div>
 +
        <div class="article-content">Channel 1: pMD19-T-xynA-LCX-ZZY, correct</div>
 +
        <div class="article-content">Channel 2: pMD19-T-xynA-HHJ, correct</div>
 +
        <div class="article-content">Channel 3: pMD19-T-xynA-HX, incorrect</div>
 +
        <div class="article-content">Channel 4: pMD19-T-xynA-LJL, incorrect</div>
 +
        <div class="article-content">Channel 5: pMD19-T-xynA-0, incorrect</div>
 +
        <div class="article-content">Channel 6: pMD19-T-xynA-SXY, incorrect</div>
 +
        <div class="article-content">Channel 7: pMD19-T-xynA-CYF, incorrect</div>
 +
        <div class="img-wrap no-margin">
 +
            <img src="https://static.igem.org/mediawiki/2021/0/0b/T--Shanghai_City_United--Results3.jpg" alt="" />
 +
            <span>Figure 3. electrophoregram of enzyme-digested products of pSIP403 and PUS </span>
 +
        </div>
 +
        <div class="article-content">Channel 1~2: pSIP403, 6kbp, correct</div>
 +
        <div class="article-content">Channel 3~4: PUS, 300bp, correct</div>
 +
        <div class="img-wrap no-margin">
 +
            <img src="https://static.igem.org/mediawiki/2021/f/f3/T--Shanghai_City_United--Results4.jpg" alt="" />
 +
            <span>Figure 4. SDS PAGE result of BL21(DE3)/pMD19-xynA, Coomassie blue staining.</span>
 +
        </div>
 +
        <div class="img-wrap no-margin">
 +
            <img src="https://static.igem.org/mediawiki/2021/e/e4/T--Shanghai_City_United--Results5-1.png" alt="" />
 +
            <span>Figure 5. Protein molecular weight result of XynA by Snapgene</span>
 +
        </div>
 +
        <div class="article-content">After the sample has been centrifuged and sonicated. we put it to
 +
            SDS-PAGE(SDS-polyacrylamide gel
 +
            electrophoresis) which could determine the level of protein expression. As seen in the gel map (Maker,
 +
            culture solution, intracellular supernatant, intracellular precipitation), the second red line of Marker
 +
            represents 25KDa and the target protein should be 23.28kDa(Fig. 5). The blue line in the culture solution
 +
            was near 23 KDa, it indicates that our protein could be sucessfully expressed in E. coli.</div>
 +
        <div class="img-wrap no-margin">
 +
            <img src="https://static.igem.org/mediawiki/2021/1/10/T--Shanghai_City_United--Results5.jpg" alt="" />
 +
            <span>Figure 6. sequencing result of PMD19-T-XynA</span>
 +
        </div>
 +
        <div class="article-content">According to the sequencing results (Fig.6) from the sequencing company, the solid
 +
            black line is the ideal
 +
            state of PMD19-T-XynA and the DNA sequence of our plasmid matches the profile. </div>
 +
        <div class="img-wrap no-margin">
 +
            <img src="https://static.igem.org/mediawiki/2021/d/d8/T--Shanghai_City_United--Results6.jpg" alt="" />
 +
            <span>Figure 7. DNS test results of E. coli/pMD19-xynA</span>
 +
        </div>
 +
        <div class="article-content">The enzyme activity test results showed groups from the left to the right,
 +
            respectively: blank, culture medium supernatant * 2, intracellular supernatant * 2, and intracellular
 +
            precipitation * 2. It could be seen by naked eyes that in the seven bottles of solution, the culture medium
 +
            solution showed red after DNS reaction, which indicated that we had xylanase with well enzyme activity to
 +
            degrade xylan and this result is consistent with the SDS PAGE result.</div>
 +
        <div class="img-wrap no-margin">
 +
            <img src="https://static.igem.org/mediawiki/2021/1/1d/T--Shanghai_City_United--Results7.jpg" alt="" />
 +
            <img src="https://static.igem.org/mediawiki/2021/8/88/T--Shanghai_City_United--Results8.jpg" alt="" />
 +
            <span>Figure 8. Colony PCR results of Lactobacillus reuteri/pSIP403-PUS-xynA and marker maps</span>
 +
        </div>
 +
        <div class="article-content">In Figure 8, it can be clearly seen that our plasmid pSIP403-PUS-xynA has been
 +
            successfully transformed
 +
            into Lactobacillus reuteri.</div>
 +
          <div class="article-content">Secretory expression of pSIP403-PUS-xynA
 +
                          in Lactobacillus reuteri </div>
 +
       
 +
        <div class="article-content">
 +
            The recombinant strain is added with 25 ng/mL SppIP to induce expression. After shaking at 37°C and 220r/ml
 +
            for 3 hours, samples are collected at different time points to establish a function model of time and
 +
            secreted expression.
 +
        </div>
 +
        <div class="img-wrap no-margin">
 +
            <img src="https://static.igem.org/mediawiki/2021/7/75/T--Shanghai_City_United--chg-3.jpg" alt="" />
 +
            <span>Figure 9. OD600 of L. reueri/ pSIP403-PUS-xynA against induction time</span>
 +
        </div>
 +
        <div class="article-content">From the experiment results above, the growth of pSIP403-PUS-xynA reaches its
 +
            optimal status at around 24h.</div>
 +
        <div class="article-title">DNS enzyme activity detection</div>
 +
        <div class="article-content">Detection principle: 3,5-dinitrosalicylic acid solution and reducing sugar
 +
            solution are reduced to brown-red amino compound after being heated together. Within a certain range, the
 +
            amount
 +
            of reducing sugar and the degree of brown-red substance color are reduced. In a certain proportional
 +
            relationship, the absorbance of the resulting compound can be measured, and the concentration of reducing
 +
            sugar
 +
            can be deduced from the standard curve.</div>
 +
        <div class="img-wrap no-margin">
 +
            <img src="https://static.igem.org/mediawiki/2021/2/2c/T--Shanghai_City_United--chg4.jpg" alt="" />
 +
            <span>Figure 11. Average unit enzyme activity of L. reueri/pSIP403-PUS-xynA against induction time</span>
 +
        </div>
 +
        <div class="article-content">The DNS color method was used to detect the unit enzyme activity of two parallel
 +
            group samples at different induction time points, and the average unit enzyme activity was calculated. The
 +
            experimental data showed that the enzyme activity was maximum when 25 ng/mL SppIP was induced for 8-12 hours
 +
            which would be the best induction time. </div>
 +
        <div class="article-title">Concern and Future Plan:</div>
 +
        <div class="article-content">
 +
            As our product is used as an additive for the poultry, safety would be the top priority we consider about.
 +
            E. coli is mainly for experimental trial use which will not be considered as the final carrier of the xynA
 +
            gene because it might have influences on disturbing the intestinal flora of the poultry. The ideal carrier
 +
            would be Lactobacillus reuteri and we have constructed the recombinant L. reueri successfully which has also
 +
            been proved to be capable of secreting xynA enzyme with good activity.<br />
 +
            Next we will consult more experts for the product development advice and more tests would be necessary to
 +
            ensure the stability and no side effect of our product. Currently, we have some thoughts about the plans of
 +
            the future experiment:<br />
 +
            1. Collect the hydrolyzed xylan to culture several bacteria, including the beneficial and the harmful so as
 +
            to tests the influences on their growth, which is designed as a simulation of the effect of our product on
 +
            the intestinal flora of the poultry.<br />
 +
            2. The stability and the enzyme performance would be affected by the acidic conditions in the
 +
            gastrointestinal mucosa of poultry thus we will take pH, temperature, etc. into account to further analyze
 +
            the performance of both our engineered L. reuteri and the xynA enzyme.
 +
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Latest revision as of 07:06, 20 October 2021

Shanghai_City_United

Results
Figure 1. electrophoregram of XynA
Figure 1 is about the electrolysis of XynA. The result of electrolysis can clearly show whether the XynA is successfully amplified. XynA was amplified by PCR. The length of XynA is 650 bp. By compared the marker and the place of DNA, the PCR of XynA is successful.
Figure 2. electrophoregram of pMD19-T-xynA enzyme-digested product
Channel 1: pMD19-T-xynA-LCX-ZZY, correct
Channel 2: pMD19-T-xynA-HHJ, correct
Channel 3: pMD19-T-xynA-HX, incorrect
Channel 4: pMD19-T-xynA-LJL, incorrect
Channel 5: pMD19-T-xynA-0, incorrect
Channel 6: pMD19-T-xynA-SXY, incorrect
Channel 7: pMD19-T-xynA-CYF, incorrect
Figure 3. electrophoregram of enzyme-digested products of pSIP403 and PUS
Channel 1~2: pSIP403, 6kbp, correct
Channel 3~4: PUS, 300bp, correct
Figure 4. SDS PAGE result of BL21(DE3)/pMD19-xynA, Coomassie blue staining.
Figure 5. Protein molecular weight result of XynA by Snapgene
After the sample has been centrifuged and sonicated. we put it to SDS-PAGE(SDS-polyacrylamide gel electrophoresis) which could determine the level of protein expression. As seen in the gel map (Maker, culture solution, intracellular supernatant, intracellular precipitation), the second red line of Marker represents 25KDa and the target protein should be 23.28kDa(Fig. 5). The blue line in the culture solution was near 23 KDa, it indicates that our protein could be sucessfully expressed in E. coli.
Figure 6. sequencing result of PMD19-T-XynA
According to the sequencing results (Fig.6) from the sequencing company, the solid black line is the ideal state of PMD19-T-XynA and the DNA sequence of our plasmid matches the profile.
Figure 7. DNS test results of E. coli/pMD19-xynA
The enzyme activity test results showed groups from the left to the right, respectively: blank, culture medium supernatant * 2, intracellular supernatant * 2, and intracellular precipitation * 2. It could be seen by naked eyes that in the seven bottles of solution, the culture medium solution showed red after DNS reaction, which indicated that we had xylanase with well enzyme activity to degrade xylan and this result is consistent with the SDS PAGE result.
Figure 8. Colony PCR results of Lactobacillus reuteri/pSIP403-PUS-xynA and marker maps
In Figure 8, it can be clearly seen that our plasmid pSIP403-PUS-xynA has been successfully transformed into Lactobacillus reuteri.
Secretory expression of pSIP403-PUS-xynA in Lactobacillus reuteri
The recombinant strain is added with 25 ng/mL SppIP to induce expression. After shaking at 37°C and 220r/ml for 3 hours, samples are collected at different time points to establish a function model of time and secreted expression.
Figure 9. OD600 of L. reueri/ pSIP403-PUS-xynA against induction time
From the experiment results above, the growth of pSIP403-PUS-xynA reaches its optimal status at around 24h.
DNS enzyme activity detection
Detection principle: 3,5-dinitrosalicylic acid solution and reducing sugar solution are reduced to brown-red amino compound after being heated together. Within a certain range, the amount of reducing sugar and the degree of brown-red substance color are reduced. In a certain proportional relationship, the absorbance of the resulting compound can be measured, and the concentration of reducing sugar can be deduced from the standard curve.
Figure 11. Average unit enzyme activity of L. reueri/pSIP403-PUS-xynA against induction time
The DNS color method was used to detect the unit enzyme activity of two parallel group samples at different induction time points, and the average unit enzyme activity was calculated. The experimental data showed that the enzyme activity was maximum when 25 ng/mL SppIP was induced for 8-12 hours which would be the best induction time.
Concern and Future Plan:
As our product is used as an additive for the poultry, safety would be the top priority we consider about. E. coli is mainly for experimental trial use which will not be considered as the final carrier of the xynA gene because it might have influences on disturbing the intestinal flora of the poultry. The ideal carrier would be Lactobacillus reuteri and we have constructed the recombinant L. reueri successfully which has also been proved to be capable of secreting xynA enzyme with good activity.
Next we will consult more experts for the product development advice and more tests would be necessary to ensure the stability and no side effect of our product. Currently, we have some thoughts about the plans of the future experiment:
1. Collect the hydrolyzed xylan to culture several bacteria, including the beneficial and the harmful so as to tests the influences on their growth, which is designed as a simulation of the effect of our product on the intestinal flora of the poultry.
2. The stability and the enzyme performance would be affected by the acidic conditions in the gastrointestinal mucosa of poultry thus we will take pH, temperature, etc. into account to further analyze the performance of both our engineered L. reuteri and the xynA enzyme.