Difference between revisions of "Team:Thrace/Model"

 
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<img src="https://static.igem.org/mediawiki/2021/7/7b/T--Thrace--modeling.png" style="width: 100%">
 
<img src="https://static.igem.org/mediawiki/2021/7/7b/T--Thrace--modeling.png" style="width: 100%">
  
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<div style="padding: 10% 10% 5%; border-top: 5px dashed #F3BBAE; border-bottom: 5px dashed #F3BBAE;">
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    <p style+="color: #26456C;
 +
    font-size: 35px;
 +
    line-height: 45px;
 +
    text-align: left;">References
 +
    </p>
 +
    <ol style="color: #26456C;
 +
    font-size: 30px;
 +
    line-height: 39px;
 +
    text-align: left;">
 +
        <li style="color: #47525E;
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        font-size: 26px;
 +
        line-height: 33px;
 +
        width: 1168px;
 +
        text-align: left;">
 +
            Piepenburg, Olaf; Williams, Colin H.; Stemple, Derek L.; Armes, Niall A. (2006). "DNA Detection Using
 +
            Recombination Proteins". PLOS Biology. 4 (7): e204. doi:10.1371/journal.pbio.0040204. PMC 1475771. PMID
 +
            16756388.
 +
        </li>
 +
        <li style="color: #47525E;
 +
        font-size: 26px;
 +
        line-height: 33px;
 +
        width: 1168px;
 +
        text-align: left;">
 +
            "Rapid PCR". Dna.utah.edu. Retrieved 2014-06-21.
 +
        </li>
 +
        <li style="color: #47525E;
 +
        font-size: 26px;
 +
        line-height: 33px;
 +
        width: 1168px;
 +
        text-align: left;">
 +
            Loo JF, Lau PM, Ho HP, Kong SK (2013). "An aptamer-based bio-barcode assay with isothermal recombinase
 +
            polymerase amplification for cytochrome-c detection and anti-cancer drug screening". Talanta. 115: 159–165.
 +
        </li>
 +
        <li style="color: #47525E;
 +
        font-size: 26px;
 +
        line-height: 33px;
 +
        width: 1168px;
 +
        text-align: left;">
 +
            "PCR primers work using standard RPA reagents". TwistDx. Retrieved 2015-10-19
 +
 +
 +
        </li>
 +
        <li style="color: #47525E;
 +
        font-size: 26px;
 +
        line-height: 33px;
 +
        width: 1168px;
 +
        text-align: left;">
 +
            Euler, M.; Wang, Y.; Otto, P.; Tomaso, H.; Escudero, R.; Anda, P.; Hufert, F. T.; Weidmann, M. (2012).
 +
            "Recombinase Polymerase Amplification Assay for Rapid Detection of Francisella tularensis". Journal of
 +
            Clinical Microbiology. 50 (7): 2234–8. doi:10.1128/JCM.06504-11. PMC 3405570. PMID 22518861.
 +
 +
 +
        </li>
 +
        <li style="color: #47525E;
 +
        font-size: 26px;
 +
        line-height: 33px;
 +
        width: 1168px;
 +
        text-align: left;">
 +
            Lakowicz, Joseph R. (1999). Principles of Fluorescence Spectroscopy. Kluwer Academic / Plenum Publishers.
 +
            ISBN 978-0-387-31278-1
 +
 +
        </li>
 +
        <li style="color: #47525E;
 +
        font-size: 26px;
 +
        line-height: 33px;
 +
        width: 1168px;
 +
        text-align: left;">
 +
            Levitus, Marcia (22 April 2020). "Tutorial: measurement of fluorescence spectra and determination of
 +
            relative fluorescence quantum yields of transparent samples". Methods and Applications in Fluorescence. 8
 +
            (3): 033001.
 +
 +
 +
        </li>
 +
        <li style="color: #47525E;
 +
        font-size: 26px;
 +
        line-height: 33px;
 +
        width: 1168px;
 +
        text-align: left;">
 +
            Brouwer, Albert M. (31 August 2011). "Standards for photoluminescence quantum yield measurements in solution
 +
            (IUPAC Technical Report)". Pure and Applied Chemistry. 83 (12): 2213–2228. doi:10.1351/PAC-REP-10-09-31.
 +
            ISSN 1365-3075. S2CID 98138291.
 +
 +
 +
        </li>
 +
        <li style="color: #47525E;
 +
        font-size: 26px;
 +
        line-height: 33px;
 +
        width: 1168px;
 +
        text-align: left;">
 +
            Nawara, Krzysztof; Waluk, Jacek (16 April 2019). "Goodbye to Quinine in Sulfuric Acid Solutions as a
 +
            Fluorescence Quantum Yield Standard". Analytical Chemistry. 91 (8): 5389–5394.
 +
            doi:10.1021/acs.analchem.9b00583. ISSN 0003-2700. PMID 30907575.
 +
 +
 +
        </li>
 +
        <li style="color: #47525E;
 +
        font-size: 26px;
 +
        line-height: 33px;
 +
        width: 1168px;
 +
        text-align: left;">
 +
            "Animation for the Principle of Fluorescence and UV-Visible Absorbance" Archived 9 June 2013 at the Wayback
 +
            Machine. PharmaXChange.info.
 +
 +
        </li>
 +
        <li style="color: #47525E;
 +
        font-size: 26px;
 +
        line-height: 33px;
 +
        width: 1168px;
 +
        text-align: left;">
 +
            Valeur, Bernard, Berberan-Santos, Mario (2012). Molecular Fluorescence: Principles and Applications.
 +
            Wiley-VCH. ISBN 978-3-527-32837-6. p. 64
 +
 +
 +
        </li>
 +
        <li style="color: #47525E;
 +
        font-size: 26px;
 +
        line-height: 33px;
 +
        width: 1168px;
 +
        text-align: left;">
 +
            Rye, H. S.; Dabora, J. M.; Quesada, M. A.; Mathies, R. A.; Glazer, A. N. (1993). "Fluorometric Assay Using
 +
            Dimeric Dyes for Double- and Single-Stranded DNA and RNA with Picogram Sensitivity". Analytical
 +
            Biochemistry. 208 (1): 144–150. doi:10.1006/abio.1993.1020. PMID 7679561.
 +
 +
 +
        </li>
 +
        <li style="color: #47525E;
 +
        font-size: 26px;
 +
        line-height: 33px;
 +
        width: 1168px;
 +
        text-align: left;">
 +
            Srinivasan, Bharath (18 March 2021). "Explicit Treatment of Non‐Michaelis‐Menten and Atypical Kinetics in
 +
            Early Drug Discovery". ChemMedChem. 16 (6): 899–918. doi:10.1002/cmdc.202000791. PMID 33231926. S2CID
 +
            227157473.
 +
 +
 +
        </li>
 +
        <li style="color: #47525E;
 +
        font-size: 26px;
 +
        line-height: 33px;
 +
        width: 1168px;
 +
        text-align: left;">
 +
            Srinivasan, Bharath (2020-09-27). "Words of advice: teaching enzyme kinetics". The FEBS Journal. 288 (7):
 +
            2068–2083. doi:10.1111/febs.15537. ISSN 1742-464X. PMID 32981225.
 +
 +
        </li>
 +
        <li style="color: #47525E;
 +
        font-size: 26px;
 +
        line-height: 33px;
 +
        width: 1168px;
 +
        text-align: left;">
 +
            Schnell, S.; Mendoza, C. (1997). "A closed form solution for time-dependent enzyme kinetics". Journal of
 +
            Theoretical Biology. 187 (2): 207–212. Bibcode:1997JThBi.187..207S. doi:10.1006/jtbi.1997.0425.
 +
 +
 +
        </li>
 +
        <li style="color: #47525E;
 +
        font-size: 26px;
 +
        line-height: 33px;
 +
        width: 1168px;
 +
        text-align: left;">
 +
            Murray, J.D. (2002). Mathematical Biology: I. An Introduction (3 ed.). Springer. ISBN 978-0-387-95223-9.
 +
 +
        </li>
 +
        <li style="color: #47525E;
 +
        font-size: 26px;
 +
        line-height: 33px;
 +
        width: 1168px;
 +
        text-align: left;">
 +
            Keener, J.; Sneyd, J. (2008). Mathematical Physiology: I: Cellular Physiology (2 ed.). Springer. ISBN
 +
            978-0-387-75846-6.
 +
 +
 +
 +
        </li>
 +
        <li style="color: #47525E;
 +
        font-size: 26px;
 +
        line-height: 33px;
 +
        width: 1168px;
 +
        text-align: left;">
 +
            Briggs, G.E.; Haldane, J.B.S. (1925). "A note on the kinematics of enzyme action". Biochem J. 19 (2):
 +
            338–339. doi:10.1042/bj0190338. PMC 1259181. PMID 16743508.
 +
 +
 +
        </li>
 +
        <li style="color: #47525E;
 +
        font-size: 26px;
 +
        line-height: 33px;
 +
        width: 1168px;
 +
        text-align: left;">
 +
            Laidler, Keith J. (1978). Physical Chemistry with Biological Applications. Benjamin/Cummings. pp. 428–430.
 +
            ISBN 0-8053-5680-0.
 +
 +
        </li>
 +
        <li style="color: #47525E;
 +
        font-size: 26px;
 +
        line-height: 33px;
 +
        width: 1168px;
 +
        text-align: left;">
 +
            Ahern, Rajagopal (2013). "Biochemistry Free and Easy". Biochemistry and Molecular Biology Education. 45 (1):
 +
            90–110. doi:10.1002/bmb.20979. ISSN 1470-8175. PMID 27228905. S2CID 34758190.
 +
 +
 +
        </li>
 +
        <li style="color: #47525E;
 +
        font-size: 26px;
 +
        line-height: 33px;
 +
        width: 1168px;
 +
        text-align: left;">
 +
            Lineweaver, Hans; Burk, Dean (March 1934). "The Determination of Enzyme Dissociation Constants". Journal of
 +
            the American Chemical Society. 56 (3): 658–666. doi:10.1021/ja01318a036. ISSN 0002-7863.
 +
 +
 +
        </li>
 +
        <li style="color: #47525E;
 +
        font-size: 26px;
 +
        line-height: 33px;
 +
        width: 1168px;
 +
        text-align: left;">
 +
            Laughlin, S.B (1981). "A simple coding procedure enhances a neuron's information capacity". Z. Naturforsch.
 +
            9–10(36):910–2.
 +
 +
        </li>
 +
    </ol>
 +
</div>
 
</html>
 
</html>
 
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{{Thrace/Footer}}
 
{{Thrace/ScriptJS}}
 
{{Thrace/ScriptJS}}

Latest revision as of 02:54, 22 October 2021

References

  1. Piepenburg, Olaf; Williams, Colin H.; Stemple, Derek L.; Armes, Niall A. (2006). "DNA Detection Using Recombination Proteins". PLOS Biology. 4 (7): e204. doi:10.1371/journal.pbio.0040204. PMC 1475771. PMID 16756388.
  2. "Rapid PCR". Dna.utah.edu. Retrieved 2014-06-21.
  3. Loo JF, Lau PM, Ho HP, Kong SK (2013). "An aptamer-based bio-barcode assay with isothermal recombinase polymerase amplification for cytochrome-c detection and anti-cancer drug screening". Talanta. 115: 159–165.
  4. "PCR primers work using standard RPA reagents". TwistDx. Retrieved 2015-10-19
  5. Euler, M.; Wang, Y.; Otto, P.; Tomaso, H.; Escudero, R.; Anda, P.; Hufert, F. T.; Weidmann, M. (2012). "Recombinase Polymerase Amplification Assay for Rapid Detection of Francisella tularensis". Journal of Clinical Microbiology. 50 (7): 2234–8. doi:10.1128/JCM.06504-11. PMC 3405570. PMID 22518861.
  6. Lakowicz, Joseph R. (1999). Principles of Fluorescence Spectroscopy. Kluwer Academic / Plenum Publishers. ISBN 978-0-387-31278-1
  7. Levitus, Marcia (22 April 2020). "Tutorial: measurement of fluorescence spectra and determination of relative fluorescence quantum yields of transparent samples". Methods and Applications in Fluorescence. 8 (3): 033001.
  8. Brouwer, Albert M. (31 August 2011). "Standards for photoluminescence quantum yield measurements in solution (IUPAC Technical Report)". Pure and Applied Chemistry. 83 (12): 2213–2228. doi:10.1351/PAC-REP-10-09-31. ISSN 1365-3075. S2CID 98138291.
  9. Nawara, Krzysztof; Waluk, Jacek (16 April 2019). "Goodbye to Quinine in Sulfuric Acid Solutions as a Fluorescence Quantum Yield Standard". Analytical Chemistry. 91 (8): 5389–5394. doi:10.1021/acs.analchem.9b00583. ISSN 0003-2700. PMID 30907575.
  10. "Animation for the Principle of Fluorescence and UV-Visible Absorbance" Archived 9 June 2013 at the Wayback Machine. PharmaXChange.info.
  11. Valeur, Bernard, Berberan-Santos, Mario (2012). Molecular Fluorescence: Principles and Applications. Wiley-VCH. ISBN 978-3-527-32837-6. p. 64
  12. Rye, H. S.; Dabora, J. M.; Quesada, M. A.; Mathies, R. A.; Glazer, A. N. (1993). "Fluorometric Assay Using Dimeric Dyes for Double- and Single-Stranded DNA and RNA with Picogram Sensitivity". Analytical Biochemistry. 208 (1): 144–150. doi:10.1006/abio.1993.1020. PMID 7679561.
  13. Srinivasan, Bharath (18 March 2021). "Explicit Treatment of Non‐Michaelis‐Menten and Atypical Kinetics in Early Drug Discovery". ChemMedChem. 16 (6): 899–918. doi:10.1002/cmdc.202000791. PMID 33231926. S2CID 227157473.
  14. Srinivasan, Bharath (2020-09-27). "Words of advice: teaching enzyme kinetics". The FEBS Journal. 288 (7): 2068–2083. doi:10.1111/febs.15537. ISSN 1742-464X. PMID 32981225.
  15. Schnell, S.; Mendoza, C. (1997). "A closed form solution for time-dependent enzyme kinetics". Journal of Theoretical Biology. 187 (2): 207–212. Bibcode:1997JThBi.187..207S. doi:10.1006/jtbi.1997.0425.
  16. Murray, J.D. (2002). Mathematical Biology: I. An Introduction (3 ed.). Springer. ISBN 978-0-387-95223-9.
  17. Keener, J.; Sneyd, J. (2008). Mathematical Physiology: I: Cellular Physiology (2 ed.). Springer. ISBN 978-0-387-75846-6.
  18. Briggs, G.E.; Haldane, J.B.S. (1925). "A note on the kinematics of enzyme action". Biochem J. 19 (2): 338–339. doi:10.1042/bj0190338. PMC 1259181. PMID 16743508.
  19. Laidler, Keith J. (1978). Physical Chemistry with Biological Applications. Benjamin/Cummings. pp. 428–430. ISBN 0-8053-5680-0.
  20. Ahern, Rajagopal (2013). "Biochemistry Free and Easy". Biochemistry and Molecular Biology Education. 45 (1): 90–110. doi:10.1002/bmb.20979. ISSN 1470-8175. PMID 27228905. S2CID 34758190.
  21. Lineweaver, Hans; Burk, Dean (March 1934). "The Determination of Enzyme Dissociation Constants". Journal of the American Chemical Society. 56 (3): 658–666. doi:10.1021/ja01318a036. ISSN 0002-7863.
  22. Laughlin, S.B (1981). "A simple coding procedure enhances a neuron's information capacity". Z. Naturforsch. 9–10(36):910–2.

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