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<img src="https://static.igem.org/mediawiki/2021/2/26/T--Thrace--design.png" style="width: 100%"> | <img src="https://static.igem.org/mediawiki/2021/2/26/T--Thrace--design.png" style="width: 100%"> | ||
+ | <div style="padding: 10% 10% 5%; border-top: 5px dashed #F3BBAE; border-bottom: 5px dashed #F3BBAE;"> | ||
+ | <p style+="color: #26456C; | ||
+ | font-size: 35px; | ||
+ | line-height: 45px; | ||
+ | text-align: left;">References | ||
+ | </p> | ||
+ | <ol style="color: #26456C; | ||
+ | font-size: 30px; | ||
+ | line-height: 39px; | ||
+ | text-align: left;"> | ||
+ | <li style="color: #47525E; | ||
+ | font-size: 26px; | ||
+ | line-height: 33px; | ||
+ | width: 1168px; | ||
+ | text-align: left;"> | ||
+ | Wu, J., Li, Q., & Fu, X. (2019). Fusobacterium nucleatum Contributes to the Carcinogenesis of Colorectal | ||
+ | Cancer by Inducing Inflammation and Suppressing Host Immunity. Translational Oncology, 12(6), 846-851. | ||
+ | <a href="https://doi.org/10.1016/j.tranon.2019.03.003"> | ||
+ | https://doi.org/10.1016/j.tranon.2019.03.003</a> | ||
+ | </li> | ||
+ | <li style="color: #47525E; | ||
+ | font-size: 26px; | ||
+ | line-height: 33px; | ||
+ | width: 1168px; | ||
+ | text-align: left;"> | ||
+ | Mima, K., Nishihara, R., Qian, Z., Cao, Y., Sukawa, Y., & Nowak, J. et al. (2021). Fusobacterium nucleatum | ||
+ | in colorectal carcinoma tissue and patient prognosis. | ||
+ | |||
+ | </li> | ||
+ | <li style="color: #47525E; | ||
+ | font-size: 26px; | ||
+ | line-height: 33px; | ||
+ | width: 1168px; | ||
+ | text-align: left;"> | ||
+ | Komiya, Y., Shimomura, Y., Higurashi, T., Sugi, Y., Arimoto, J., & Umezawa, S. et al. (2018). Patients with | ||
+ | colorectal cancer have identical strains of Fusobacterium nucleatum in their colorectal cancer and oral | ||
+ | cavity. Gut, 68(7), 1335-1337. | ||
+ | <a href="https://doi.org/10.1136/gutjnl-2018-316661"> | ||
+ | https://doi.org/10.1136/gutjnl-2018-316661</a> | ||
+ | </li> | ||
+ | <li style="color: #47525E; | ||
+ | font-size: 26px; | ||
+ | line-height: 33px; | ||
+ | width: 1168px; | ||
+ | text-align: left;"> | ||
+ | Guven, D., Dizdar, O., Alp, A., Akdoğan Kittana, F., Karakoc, D., & Hamaloglu, E. et al. (2019). Analysis of | ||
+ | Fusobacterium nucleatum and Streptococcus gallolyticus in saliva of colorectal cancer patients. Biomarkers | ||
+ | In Medicine, 13(9), 725-735. | ||
+ | <a href="https://doi.org/10.2217/bmm-2019-0020"> | ||
+ | https://doi.org/10.2217/bmm-2019-0020</a> | ||
+ | </li> | ||
+ | <li style="color: #47525E; | ||
+ | font-size: 26px; | ||
+ | line-height: 33px; | ||
+ | width: 1168px; | ||
+ | text-align: left;"> | ||
+ | Castellarin, M., Warren, R., Freeman, J., Dreolini, L., Krzywinski, M., & Strauss, J. et al. (2011). | ||
+ | Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma. Genome Research, 22(2), | ||
+ | 299-306. | ||
+ | <a href="https://doi.org/10.1101/gr.126516.111"> | ||
+ | https://doi.org/10.1101/gr.126516.111</a> | ||
+ | </li> | ||
+ | <li style="color: #47525E; | ||
+ | font-size: 26px; | ||
+ | line-height: 33px; | ||
+ | width: 1168px; | ||
+ | text-align: left;"> | ||
+ | Rapado-González, Majem, Álvarez-Castro, Díaz-Peña, Abalo, & Suárez-Cabrera et al. (2019). A Novel | ||
+ | Saliva-Based miRNA Signature for Colorectal Cancer Diagnosis. Journal Of Clinical Medicine, 8(12), 2029. | ||
+ | <a href="https://doi.org/10.3390/jcm8122029"> | ||
+ | https://doi.org/10.3390/jcm8122029</a> | ||
+ | </li> | ||
+ | <li style="color: #47525E; | ||
+ | font-size: 26px; | ||
+ | line-height: 33px; | ||
+ | width: 1168px; | ||
+ | text-align: left;"> | ||
+ | Sazanov, A., Kiselyova, E., Zakharenko, A., Romanov, M., & Zaraysky, M. (2016). Plasma and saliva miR-21 | ||
+ | expression in colorectal cancer patients. Journal Of Applied Genetics, 58(2), 231-237. | ||
+ | <a href="https://doi.org/10.1007/s13353-016-0379-9"> | ||
+ | https://doi.org/10.1007/s13353-016-0379-9</a> | ||
+ | </li> | ||
+ | <li style="color: #47525E; | ||
+ | font-size: 26px; | ||
+ | line-height: 33px; | ||
+ | width: 1168px; | ||
+ | text-align: left;"> | ||
+ | Kellner, M., Koob, J., Gootenberg, J., Abudayyeh, O., & Zhang, F. (2019). SHERLOCK: nucleic acid detection | ||
+ | with CRISPR nucleases. Nature Protocols, 14(10), 2986-3012. | ||
+ | <a href="https://doi.org/10.1038/s41596-019-0210-2"> | ||
+ | https://doi.org/10.1038/s41596-019-0210-2</a> | ||
+ | </li> | ||
+ | <li style="color: #47525E; | ||
+ | font-size: 26px; | ||
+ | line-height: 33px; | ||
+ | width: 1168px; | ||
+ | text-align: left;"> | ||
+ | Lobato, I., & O'Sullivan, C. (2018). Recombinase polymerase amplification: Basics, applications and recent | ||
+ | advances. Trac Trends In Analytical Chemistry, 98, 19-35. | ||
+ | <a href="https://doi.org/10.1016/j.trac.2017.10.015"> | ||
+ | https://doi.org/10.1016/j.trac.2017.10.015</a> | ||
+ | </li> | ||
+ | <li style="color: #47525E; | ||
+ | font-size: 26px; | ||
+ | line-height: 33px; | ||
+ | width: 1168px; | ||
+ | text-align: left;"> | ||
+ | Abd El Wahed, A., El-Deeb, A., El-Tholoth, M., Abd El Kader, H., Ahmed, A., & Hassan, S. et al. (2013). A | ||
+ | Portable Reverse Transcription Recombinase Polymerase Amplification Assay for Rapid Detection of | ||
+ | Foot-and-Mouth Disease Virus. Plos ONE, 8(8), e71642. | ||
+ | <a href="https://doi.org/10.1371/journal.pone.0071642"> | ||
+ | https://doi.org/10.1371/journal.pone.0071642</a> | ||
+ | </li> | ||
+ | <li style="color: #47525E; | ||
+ | font-size: 26px; | ||
+ | line-height: 33px; | ||
+ | width: 1168px; | ||
+ | text-align: left;"> | ||
+ | Daher, R., Stewart, G., Boissinot, M., & Bergeron, M. (2016). Recombinase Polymerase Amplification for | ||
+ | Diagnostic Applications. Clinical Chemistry, 62(7), 947-958. | ||
+ | <a href="https://doi.org/10.1373/clinchem.2015.24582"> | ||
+ | https://doi.org/10.1373/clinchem.2015.24582</a> | ||
+ | </li> | ||
+ | <li style="color: #47525E; | ||
+ | font-size: 26px; | ||
+ | line-height: 33px; | ||
+ | width: 1168px; | ||
+ | text-align: left;"> | ||
+ | Huang, S., Yang, Z., Zou, D., Dong, D., Liu, A., Liu, W., & Huang, L. (2016). Rapid detection of nusG and | ||
+ | fadA in Fusobacterium nucleatum by loop-mediated isothermal amplification. Journal Of Medical Microbiology, | ||
+ | 65(8), 760-769. | ||
+ | <a href="https://doi.org/10.1099/jmm.0.000300"> | ||
+ | https://doi.org/10.1099/jmm.0.000300</a> | ||
+ | </li> | ||
+ | <li style="color: #47525E; | ||
+ | font-size: 26px; | ||
+ | line-height: 33px; | ||
+ | width: 1168px; | ||
+ | text-align: left;"> | ||
+ | Li, H., Xing, S., Xu, J., He, Y., Lai, Y., & Wang, Y. et al. (2021). Aptamer-based CRISPR/Cas12a assay for | ||
+ | the ultrasensitive detection of extracellular vesicle proteins. Talanta, 221, 121670. | ||
+ | <a href="https://doi.org/10.1016/j.talanta.2020.121670"> | ||
+ | https://doi.org/10.1016/j.talanta.2020.121670</a> | ||
+ | </li> | ||
+ | <li style="color: #47525E; | ||
+ | font-size: 26px; | ||
+ | line-height: 33px; | ||
+ | width: 1168px; | ||
+ | text-align: left;"> | ||
+ | Dai, Y., Somoza, R., Wang, L., Welter, J., Li, Y., Caplan, A., & Liu, C. (2019). Exploring the | ||
+ | Trans‐Cleavage Activity of CRISPR‐Cas12a (cpf1) for the Development of a Universal Electrochemical | ||
+ | Biosensor. Angewandte Chemie, 131(48), 17560-17566. | ||
+ | <a href="https://doi.org/10.1002/ange.201910772"> | ||
+ | https://doi.org/10.1002/ange.201910772</a> | ||
+ | </li> | ||
+ | <li style="color: #47525E; | ||
+ | font-size: 26px; | ||
+ | line-height: 33px; | ||
+ | width: 1168px; | ||
+ | text-align: left;"> | ||
+ | Concordet, J., & Haeussler, M. (2018). CRISPOR: intuitive guide selection for CRISPR/Cas9 genome editing | ||
+ | experiments and screens. Nucleic Acids Research, 46(W1), W242-W245. | ||
+ | <a href="https://doi.org/10.1093/nar/gky354"> | ||
+ | https://doi.org/10.1093/nar/gky354</a> | ||
+ | </li> | ||
+ | <li style="color: #47525E; | ||
+ | font-size: 26px; | ||
+ | line-height: 33px; | ||
+ | width: 1168px; | ||
+ | text-align: left;"> | ||
+ | De Puig, H., Lee, R., Najjar, D., Tan, X., Soenksen, L., & Angenent-Mari, N. et al. (2021). Minimally | ||
+ | instrumented SHERLOCK (miSHERLOCK) for CRISPR-based point-of-care diagnosis of SARS-CoV-2 and emerging | ||
+ | variants. Science Advances, 7(32). | ||
+ | <a href="https://doi.org/10.1126/sciadv.abh2944"> | ||
+ | https://doi.org/10.1126/sciadv.abh2944</a> | ||
+ | </li> | ||
+ | <li style="color: #47525E; | ||
+ | font-size: 26px; | ||
+ | line-height: 33px; | ||
+ | width: 1168px; | ||
+ | text-align: left;"> | ||
+ | Kramer, M. (2011). Stem‐Loop RT‐qPCR for miRNAs. Current Protocols In Molecular Biology, 95(1). | ||
+ | <a href="https://doi.org/10.1002/0471142727.mb1510s95"> | ||
+ | https://doi.org/10.1093/nar/gni178</a> | ||
+ | </li> | ||
+ | <li style="color: #47525E; | ||
+ | font-size: 26px; | ||
+ | line-height: 33px; | ||
+ | width: 1168px; | ||
+ | text-align: left;"> | ||
+ | Chen, C. (2005). Real-time quantification of microRNAs by stem-loop RT-PCR. Nucleic Acids Research, 33(20), | ||
+ | e179-e179. | ||
+ | <a href="https://doi.org/10.1093/nar/gni178"> | ||
+ | https://doi.org/10.1093/nar/gni178</a> | ||
+ | </li> | ||
+ | </ol> | ||
+ | <p style="color: #47525E; | ||
+ | font-size: 26px; | ||
+ | line-height: 33px; | ||
+ | width: 1168px; | ||
+ | text-align: left;">Figure 1: RPA mechanism | ||
+ | Bhat A.I., Rao G.P. (2020) Recombinase Polymerase Amplification. In: Characterization of Plant Viruses. Springer | ||
+ | Protocols Handbooks. Humana, New York, NY. | ||
+ | <a href="https://doi.org/10.1007/978-1-0716-0334-5_40"> | ||
+ | https://doi.org/10.1007/978-1-0716-0334-5_40</a> | ||
+ | </p> | ||
+ | <p style="color: #47525E; | ||
+ | font-size: 26px; | ||
+ | line-height: 33px; | ||
+ | width: 1168px; | ||
+ | text-align: left;">Figure 2: SHERLOCK mechanism | ||
+ | Mustafa, M., & Makhawi, A. (2021). SHERLOCK and DETECTR: CRISPR-Cas Systems as Potential Rapid Diagnostic Tools | ||
+ | for Emerging Infectious Diseases. Journal Of Clinical Microbiology, 59(3). | ||
+ | <a href="https://doi.org/10.1128/jcm.00745-20"> | ||
+ | https://doi.org/10.1128/jcm.00745-20 </a> | ||
+ | </p> | ||
+ | </div> | ||
</html> | </html> | ||
{{Thrace/Footer}} | {{Thrace/Footer}} | ||
{{Thrace/ScriptJS}} | {{Thrace/ScriptJS}} |
Latest revision as of 03:32, 22 October 2021
![](https://static.igem.org/mediawiki/2021/2/26/T--Thrace--design.png)
References
- Wu, J., Li, Q., & Fu, X. (2019). Fusobacterium nucleatum Contributes to the Carcinogenesis of Colorectal Cancer by Inducing Inflammation and Suppressing Host Immunity. Translational Oncology, 12(6), 846-851. https://doi.org/10.1016/j.tranon.2019.03.003
- Mima, K., Nishihara, R., Qian, Z., Cao, Y., Sukawa, Y., & Nowak, J. et al. (2021). Fusobacterium nucleatum in colorectal carcinoma tissue and patient prognosis.
- Komiya, Y., Shimomura, Y., Higurashi, T., Sugi, Y., Arimoto, J., & Umezawa, S. et al. (2018). Patients with colorectal cancer have identical strains of Fusobacterium nucleatum in their colorectal cancer and oral cavity. Gut, 68(7), 1335-1337. https://doi.org/10.1136/gutjnl-2018-316661
- Guven, D., Dizdar, O., Alp, A., Akdoğan Kittana, F., Karakoc, D., & Hamaloglu, E. et al. (2019). Analysis of Fusobacterium nucleatum and Streptococcus gallolyticus in saliva of colorectal cancer patients. Biomarkers In Medicine, 13(9), 725-735. https://doi.org/10.2217/bmm-2019-0020
- Castellarin, M., Warren, R., Freeman, J., Dreolini, L., Krzywinski, M., & Strauss, J. et al. (2011). Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma. Genome Research, 22(2), 299-306. https://doi.org/10.1101/gr.126516.111
- Rapado-González, Majem, Álvarez-Castro, Díaz-Peña, Abalo, & Suárez-Cabrera et al. (2019). A Novel Saliva-Based miRNA Signature for Colorectal Cancer Diagnosis. Journal Of Clinical Medicine, 8(12), 2029. https://doi.org/10.3390/jcm8122029
- Sazanov, A., Kiselyova, E., Zakharenko, A., Romanov, M., & Zaraysky, M. (2016). Plasma and saliva miR-21 expression in colorectal cancer patients. Journal Of Applied Genetics, 58(2), 231-237. https://doi.org/10.1007/s13353-016-0379-9
- Kellner, M., Koob, J., Gootenberg, J., Abudayyeh, O., & Zhang, F. (2019). SHERLOCK: nucleic acid detection with CRISPR nucleases. Nature Protocols, 14(10), 2986-3012. https://doi.org/10.1038/s41596-019-0210-2
- Lobato, I., & O'Sullivan, C. (2018). Recombinase polymerase amplification: Basics, applications and recent advances. Trac Trends In Analytical Chemistry, 98, 19-35. https://doi.org/10.1016/j.trac.2017.10.015
- Abd El Wahed, A., El-Deeb, A., El-Tholoth, M., Abd El Kader, H., Ahmed, A., & Hassan, S. et al. (2013). A Portable Reverse Transcription Recombinase Polymerase Amplification Assay for Rapid Detection of Foot-and-Mouth Disease Virus. Plos ONE, 8(8), e71642. https://doi.org/10.1371/journal.pone.0071642
- Daher, R., Stewart, G., Boissinot, M., & Bergeron, M. (2016). Recombinase Polymerase Amplification for Diagnostic Applications. Clinical Chemistry, 62(7), 947-958. https://doi.org/10.1373/clinchem.2015.24582
- Huang, S., Yang, Z., Zou, D., Dong, D., Liu, A., Liu, W., & Huang, L. (2016). Rapid detection of nusG and fadA in Fusobacterium nucleatum by loop-mediated isothermal amplification. Journal Of Medical Microbiology, 65(8), 760-769. https://doi.org/10.1099/jmm.0.000300
- Li, H., Xing, S., Xu, J., He, Y., Lai, Y., & Wang, Y. et al. (2021). Aptamer-based CRISPR/Cas12a assay for the ultrasensitive detection of extracellular vesicle proteins. Talanta, 221, 121670. https://doi.org/10.1016/j.talanta.2020.121670
- Dai, Y., Somoza, R., Wang, L., Welter, J., Li, Y., Caplan, A., & Liu, C. (2019). Exploring the Trans‐Cleavage Activity of CRISPR‐Cas12a (cpf1) for the Development of a Universal Electrochemical Biosensor. Angewandte Chemie, 131(48), 17560-17566. https://doi.org/10.1002/ange.201910772
- Concordet, J., & Haeussler, M. (2018). CRISPOR: intuitive guide selection for CRISPR/Cas9 genome editing experiments and screens. Nucleic Acids Research, 46(W1), W242-W245. https://doi.org/10.1093/nar/gky354
- De Puig, H., Lee, R., Najjar, D., Tan, X., Soenksen, L., & Angenent-Mari, N. et al. (2021). Minimally instrumented SHERLOCK (miSHERLOCK) for CRISPR-based point-of-care diagnosis of SARS-CoV-2 and emerging variants. Science Advances, 7(32). https://doi.org/10.1126/sciadv.abh2944
- Kramer, M. (2011). Stem‐Loop RT‐qPCR for miRNAs. Current Protocols In Molecular Biology, 95(1). https://doi.org/10.1093/nar/gni178
- Chen, C. (2005). Real-time quantification of microRNAs by stem-loop RT-PCR. Nucleic Acids Research, 33(20), e179-e179. https://doi.org/10.1093/nar/gni178
Figure 1: RPA mechanism Bhat A.I., Rao G.P. (2020) Recombinase Polymerase Amplification. In: Characterization of Plant Viruses. Springer Protocols Handbooks. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-0334-5_40
Figure 2: SHERLOCK mechanism Mustafa, M., & Makhawi, A. (2021). SHERLOCK and DETECTR: CRISPR-Cas Systems as Potential Rapid Diagnostic Tools for Emerging Infectious Diseases. Journal Of Clinical Microbiology, 59(3). https://doi.org/10.1128/jcm.00745-20