Difference between revisions of "Team:UIUC Illinois/Parts"

 
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<html lang="en"><head><meta charset="utf-8"/><meta content="width=device-width,initial-scale=1" name="viewport"/><title>Parts Table | UIUCiGEM</title><script src="https://2020.igem.org/common/MathJax-2.5-latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script><link href="https://2021.igem.org/Template:UIUC_Illinois/css/contentCSS?action=raw&amp;ctype=text/css" rel="stylesheet"/></head><body><nav class="navbar navbar-expand-xl fixed-top"><div class="container d-flex justify-content-between"><a class="navbar-brand d-lg-inline-block" href="https://2021.igem.org/Team:UIUC_Illinois"><span>iGEM </span>UIUC</a><button aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation" class="navbar-toggler" data-target="#navbarNav" data-toggle="collapse" type="button"><span class="navbar-toggler-icon"></span></button><div class="collapse navbar-collapse" id="navbarNav"><ul class="navbar-nav ml-auto"><li class="nav-item"><a class="nav-link" 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class="far fa-moon"></i></div></div></nav><header class="d-flex justify-content-center align-items-center"><div class="container"><h1>Parts Table</h1><p class="lead pl-1"></p><hr class="my-4"/></div></header><main><div class="container"><div class="row"><div class="sidebar col-lg-3"><div class="nav" id="contents"><h5>Contents</h5><ul></ul></div></div><div class="content col-lg-9"><article><p>The three sequences are the computationally generated and tested in the wetlab.</p><table><thead><tr><th style="text-align:center">Name</th><th style="text-align:center">Description</th><th style="text-align:center">Length</th></tr></thead><tbody><tr><td style="text-align:center"><a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K3713001">BBa_K3713001</a></td><td style="text-align:center">Variant 1 of PETase candidates</td><td style="text-align:center">915</td></tr><tr><td style="text-align:center"><a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K3713002">BBa_K3713002</a></td><td style="text-align:center">Variant 2 of PETase candidates</td><td style="text-align:center">915</td></tr><tr><td style="text-align:center"><a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K3713003">BBa_K3713003</a></td><td style="text-align:center">Variant 3 of PETase candidates</td><td style="text-align:center">915</td></tr></tbody></table></article></div></div></div></main><footer><div class="container"><p>Sample template built using the iGEM Wiki Starter Pack by BITS Goa.</p><p>Code released under the MIT license.</p><p>Based on <a href="https://getbootstrap.com">Bootstrap</a> and themes <a href="https://bootswatch.com/flatly/">Flatly</a> and <a href="https://bootswatch.com/darkly/">Darkly</a> from <a href="https://bootswatch.com/">Bootswatch</a>.</p><p>Some content from the <a href="https://2020.igem.org/Team:Example">iGEM Example Wiki</a>. 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<html lang="en"><head><meta charset="utf-8"/><meta content="width=device-width,initial-scale=1" name="viewport"/><title>Parts Table | UIUCiGEM</title><link href="https://2021.igem.org/Template:UIUC_Illinois/css/contentCSS?action=raw&amp;ctype=text/css" rel="stylesheet"/></head><body><nav class="navbar navbar-expand-xl fixed-top"><div class="container d-flex justify-content-between"><a class="navbar-brand" href="https://2021.igem.org/Team:UIUC_Illinois"><i class="navbar-logo"></i></a><button aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation" class="navbar-toggler" data-target="#navbarNav" data-toggle="collapse" type="button"><span class="navbar-toggler-icon"></span></button><div class="collapse navbar-collapse" id="navbarNav"><ul class="navbar-nav ml-auto"><li class="nav-item dropdown"><a aria-expanded="false" aria-haspopup="true" class="nav-link dropdown-toggle" data-toggle="dropdown" href="#" id="navbarTeamDropdown" role="button">Team</a><div aria-labelledby="navbarTeamDropdown" class="dropdown-menu"><a class="dropdown-item" href="https://2021.igem.org/Team:UIUC_Illinois/Team">Team</a><a class="dropdown-item" href="https://2021.igem.org/Team:UIUC_Illinois/Attributions">Attributions</a><a class="dropdown-item" href="https://2021.igem.org/Team:UIUC_Illinois/Collaborations">Collaborations</a></div></li><li class="nav-item dropdown"><a aria-expanded="false" aria-haspopup="true" class="nav-link dropdown-toggle" data-toggle="dropdown" href="#" id="navbarProjectDropdown" role="button">Project</a><div aria-labelledby="navbarProjectDropdown" class="dropdown-menu"><a class="dropdown-item" href="https://2021.igem.org/Team:UIUC_Illinois/Contribution">Contribution</a><a class="dropdown-item" href="https://2021.igem.org/Team:UIUC_Illinois/Description">Description</a><a class="dropdown-item" href="https://2021.igem.org/Team:UIUC_Illinois/Engineering">Engineering Success</a><a class="dropdown-item" href="https://2021.igem.org/Team:UIUC_Illinois/Package">Excellence in another area</a><a class="dropdown-item" href="https://2021.igem.org/Team:UIUC_Illinois/Experiments">Experiments</a><a class="dropdown-item" href="https://2021.igem.org/Team:UIUC_Illinois/Model">Model</a><a class="dropdown-item" href="https://2021.igem.org/Team:UIUC_Illinois/Notebook">Notebook</a><a class="dropdown-item" href="https://2021.igem.org/Team:UIUC_Illinois/Partnership">Partnership</a><a class="dropdown-item" href="https://2021.igem.org/Team:UIUC_Illinois/Implementation">Proposed Implementation</a><a class="dropdown-item" href="https://2021.igem.org/Team:UIUC_Illinois/Results">Results</a></div></li><li class="nav-item"><a class="nav-link" href="https://2021.igem.org/Team:UIUC_Illinois/Parts">Parts</a></li><li class="nav-item"><a class="nav-link" href="https://2021.igem.org/Team:UIUC_Illinois/Safety">Safety</a></li><li class="nav-item"><a class="nav-link" href="https://2021.igem.org/Team:UIUC_Illinois/Human_Practices">Human Practices</a></li></ul></div><div class="d-flex" id="themeSwitchWrapper"><i class="far fa-sun"></i><div id="themeSwitch"><label class="switch" for="themeSwitchInput"><input id="themeSwitchInput" type="checkbox"/><span class="slider round"></span></label></div><i class="far fa-moon"></i></div></div></nav><header class="d-flex justify-content-center align-items-center"><div class="container"><h1>Parts Table</h1><p class="lead pl-1"></p><hr class="my-4"/></div></header><main><div class="container"><div class="row"><div class="sidebar col-lg-3"><div class="nav" id="contents"><h5>Contents</h5><ul></ul></div></div><div class="content col-lg-9"><article><p>The three sequences are the computationally generated and tested in the wetlab. Team Toronto generously provided the estimated thermostability and catalytic activity of our sequences based on their model.</p><table><caption id="table1partssubmittedbyuiuc_illinois2021">Table 1: Parts submitted by UIUC_Illinois 2021</caption><thead><tr><th style="text-align:center">Name</th><th style="text-align:center">Description</th><th style="text-align:center">Tm(Celcius)</th><th style="text-align:center">catalytic activity</th></tr></thead><tbody><tr><td style="text-align:center"><a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K3713001">BBa_K3713001</a></td><td style="text-align:center">Variant 1 of PETase candidates</td><td style="text-align:center">82.9</td><td style="text-align:center">-0.60</td></tr><tr><td style="text-align:center"><a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K3713002">BBa_K3713002</a></td><td style="text-align:center">Variant 2 of PETase candidates</td><td style="text-align:center">81.5</td><td style="text-align:center">1.58</td></tr><tr><td style="text-align:center"><a href="http://parts.igem.org/wiki/index.php?title=Part:BBa_K3713003">BBa_K3713003</a></td><td style="text-align:center">Variant 3 of PETase candidates</td><td style="text-align:center">81.9</td><td style="text-align:center">0.50</td></tr></tbody></table><p>For the thermostability measure, Tm, the melting temperature of protein sequence is used. Thermostability model is more accurate than the catlytic activity model. Catalytic activity values are the relative ranks, 1 being the worst, 2 being the best and 3 for okay.</p></article></div></div></div></main><footer><div class="container"><div class="row justify-content-center"><div id="footerTeamLogo"></div><div id="UIUCLogo"></div><div id="CABBILogo"></div><div id="IGBLogo"></div></div><p>iGEM UIUC_Illinois</p><p>Email: <a href="mailto:igembitsgoa@gmail.com">illinoisigem@gmail.com</a></p><p>Headquarter: <a href="https://www.igb.illinois.edu/">Carl R. Woese Institute for Genomic Biology</a></p><p>1206 W Gregory Dr. Urbana IL 61801</p><br/><p>Sample template built using the iGEM Wiki Starter Pack by BITS Goa.</p><p>2021 UIUC_Illinois[Judging Form](https://igem.org/2021_Judging_Form?id=3713)</p></div></footer><script src="https://2021.igem.org/Template:UIUC_Illinois/content-bundleJS?action=raw&amp;ctype=text/javascript"></script></body></html>

Latest revision as of 03:34, 22 October 2021

Parts Table | UIUCiGEM

Parts Table

The three sequences are the computationally generated and tested in the wetlab. Team Toronto generously provided the estimated thermostability and catalytic activity of our sequences based on their model.

Table 1: Parts submitted by UIUC_Illinois 2021
NameDescriptionTm(Celcius)catalytic activity
BBa_K3713001Variant 1 of PETase candidates82.9-0.60
BBa_K3713002Variant 2 of PETase candidates81.51.58
BBa_K3713003Variant 3 of PETase candidates81.90.50

For the thermostability measure, Tm, the melting temperature of protein sequence is used. Thermostability model is more accurate than the catlytic activity model. Catalytic activity values are the relative ranks, 1 being the worst, 2 being the best and 3 for okay.