Difference between revisions of "Team:Yonsei Korea/Description"

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                         While this may have been a dream for us, in times where we Covid 19 was on a rampage, we were inspired to make a difference in our community. As individuals, we sought to rise above circumstances, create opportunity, and strive to make our mark on the world. Our goals were to fully grasp the scope of the problem the Korean farmers were experiencing with this fungus and curate a research protocol that would allow us to model a sensor system that can be scaled for industrial application through further research. With limited resources, we established the prevalence of rice blast in South Korea; after that, synthetic DNA modifications coupled with a nanoparticle synthesis employed a sensing model. We believe this will lay the ground for the development of a price, ease use, and affordable early detection system for Magnaporthe oryzae fungus.
 
                         While this may have been a dream for us, in times where we Covid 19 was on a rampage, we were inspired to make a difference in our community. As individuals, we sought to rise above circumstances, create opportunity, and strive to make our mark on the world. Our goals were to fully grasp the scope of the problem the Korean farmers were experiencing with this fungus and curate a research protocol that would allow us to model a sensor system that can be scaled for industrial application through further research. With limited resources, we established the prevalence of rice blast in South Korea; after that, synthetic DNA modifications coupled with a nanoparticle synthesis employed a sensing model. We believe this will lay the ground for the development of a price, ease use, and affordable early detection system for Magnaporthe oryzae fungus.
 
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Revision as of 06:02, 18 October 2021

IGEM_YONSEI

Introducing:

PathoSense

a revolutionary technology utilizers biosensors to detect inconspicuous pathogens

PROJECT DESCRIPTION

    The period 1950 – 1960 saw a new era of the green revolution cement its place on the global production stage. In this era, fresh food, "Oryza sativa," today known as Rice, emerged as an essential, social, cultural, and political commodity. Predominantly, the plant was grown in most Asian countries; however, it has become the most consumed, produced, and widely cultivated food crop across the globe.

igem_yonsei

    Today, with a threefold increase, from 221 – 745 million tons from 1960 to 2018, rice has become more than a food crop. With over 144 million farms cultivating this plant in 2018 and 90% of its producers emerging from Asia, it has transformed societies, economies, and human welfare. Rice production in Asian countries like our nation (South Korea) has provided food for millions, reduced poverty and hunger, and improved livelihoods.

igem_yonsei

    In this regard, Rice finds itself a highly protected commodity facing an increasing demand worldwide due to increasing population, rising demand, climate change, and diet diversification. However, like many others today, this food crop faces significant challenges that threaten the future of its production. Climate change, natural hazards, low income in agriculture, and labor scarcity have become a pandemic for many large producers.

    Case in point, in South Korea, we found that the aging of farmers, feminization of farming, and urbanization have significantly impacted the production of Rice on a national scale. This issue was so much that 2020 saw Korean rice consumption fall to 57.5 kilograms per capita. (Statista.Com, Nina Jobst, Apr 7, 2021) To this end, the Korean Ministry of Agriculture started to subsidize the plant's production; however, a deeper conversation with farmers also reveals that these are mere surface issues to the alarming decrease of rice production. A greater environmental risk poses a danger to this shortage: in the form of (Magnaporthe oryzae) rice blast. As noted, as Team the IGEM Yonsei group sought to study the Magnaporthe oryzae: A fungus that causes rice blast and has increasingly affected rice plants leading to approximately 30% of rice production losses globally and 15 - 60 % annual incidents in Korea.

    To this end, a new challenge arose. We asked ourselves, "What could we do in our capacity to mitigate this growing issue within our nation and the globe at large?" and as an aspiring scientist, the immediate response was to delve into more research, develop and disseminate innovative technologies, and practices to overcome this issue. Many scientists had also taken this direction of thought, implementing new technologies to mitigate this risk through rapid detections; however, they are skill extensive or show late diagnosis. This shortcoming was realized when Covid 19 self-test and precision medical tests were the heat of media and benchtop research finally making its way into society. In conjunction with our background knowledge for the Yonsei University studies of nano biomedical applications in precision sensors, we sort to develop a novel detection system.

igem_yonsei

    Our nano detection system would allow farmers to quickly test their rice plants for signs of infection before lesion visibility. When the characteristic lesions have appeared on the rice plant, the fungus has already reproduced and spread its spores. After identifying and isolating the genetic material associated with the rice blast pathogen, we plan to develop a detection technology by achieving DNA cleavage through DNA zymes. A simple Magnaporthe oryzae complementary DNA modified gold nanoparticle sensor would be applied for a conjugation test with extracted pathogen DNA samples. The DNA would bind to our DNA modified gold nanoparticles and provide visual feedback that is easy to use for any rice farmer to identify.

    While this may have been a dream for us, in times where we Covid 19 was on a rampage, we were inspired to make a difference in our community. As individuals, we sought to rise above circumstances, create opportunity, and strive to make our mark on the world. Our goals were to fully grasp the scope of the problem the Korean farmers were experiencing with this fungus and curate a research protocol that would allow us to model a sensor system that can be scaled for industrial application through further research. With limited resources, we established the prevalence of rice blast in South Korea; after that, synthetic DNA modifications coupled with a nanoparticle synthesis employed a sensing model. We believe this will lay the ground for the development of a price, ease use, and affordable early detection system for Magnaporthe oryzae fungus.

REFERENCES         
  1. 1. Bhandari, Humnath. "Global rice production, consumption and trade: trends and future directions." Proceedings of the Korean Society of Crop Science Conference. The Korean Society of Crop Science, 2019.
  2. 2. Asibi, Aziiba Emmanuel, Qiang Chai, and Jeffrey A. Coulter. "Rice blast: A disease with implications for global food security." Agronomy 9.8 (2019): 451.
  3. 3. Pooja, Kapoor, and Abhishek Katoch. "Past, present and future of rice blast management." Plant Science Today 1.3 (2014): 165-173.
  4. 4. Roy-Barman, Subhankar, and Bharat B. Chattoo. "Rice blast fungus sequenced." Current Science 89.6 (2005): 930-932.
  5. 5. Lu, Yi, and Juewen Liu. "Functional DNA nanotechnology: emerging applications of DNAzymes and aptamers." Current Opinion in Biotechnology 17.6 (2006): 580-588.
  6. 6. Cheong, Jiyong, et al. "Fast detection of SARS-CoV-2 RNA via the integration of plasmonic thermocycling and fluorescence detection in a portable device." Nature biomedical engineering 4.12 (2020): 1159-1167.
  7. 7. Zagorovsky, Kyryl, and Warren CW Chan. "A plasmonic DNAzyme strategy for point‐of‐care genetic detection of infectious pathogens." Angewandte Chemie International Edition 52.11 (2013): 3168-3171.
  8. 8. Hill, Haley D., and Chad A. Mirkin. "The bio-barcode assay for the detection of protein and nucleic acid targets using DTT-induced ligand exchange." Nature protocols 1.1 (2006): 324-336.