Team:Open Science Global/Parts

Part Collection

Overview

The main goal of our project is to make a frugal biofoundry capable of producing high quantities of enzymes and other proteins of interest. To do that, our team designed a library of parts in order to test in a high-throughput way the combinations that would generate the best results. For this year, the most important part generated by our team was the pHT43 plasmid (BBa_K4103000), an improvement on (BBa_K1074001) from 2013 - this plasmid acts as a shuttle vector between E. coli and B. subtilis, and allows the efficient production and secretion of our protein-of-interest, with our team focusing efforts to use this vector for the production of Pfu-Sso7d Polymerase (BBa_K4103011) codon optimized for B. Subtilis using the software created by our team.

For how we made our parts, see "Friendzymes BioBlaze Notebook" and "Friendzymes OSN Notebook" (too large to embed).

Basic Parts

Part Name Type Description Length (bp)
http://parts.igem.org/Part:BBa_K4103001 Conjugation origin Transfer Origin pIP501 319
http://parts.igem.org/Part:BBa_K4103002 Resistance marker kanR 968
http://parts.igem.org/Part:BBa_K4103003 Resistance marker SpecR 990
http://parts.igem.org/Part:BBa_K4103004 Origin of replication EcoOri 589
http://parts.igem.org/Part:BBa_K4103005 Resistance Marker catA9 946
http://parts.igem.org/Part:BBa_K4103007 Ribozyme Insulator SarJ 79
http://parts.igem.org/Part:BBa_K4103008 Insulator HDV-1 (3' Ribozyme Insulator) 85
http://parts.igem.org/Part:BBa_K4103010 Vector pOpen_v3 2687
http://parts.igem.org/Part:BBa_K4103013 Assembly Connector ACLstart 191
http://parts.igem.org/Part:BBa_K4103014 Assembly Connector ACRend 170
http://parts.igem.org/Part:BBa_K4103015 Toxin/Negative Selection Txn_ccdB 933
http://parts.igem.org/Part:BBa_K4103016 Homology Arm 5'lacA 508
http://parts.igem.org/Part:BBa_K4103017 Homology Arm 3'lacA 408
http://parts.igem.org/Part:BBa_K4103018 Homology Arm 5'AmyE promoter 521
http://parts.igem.org/Part:BBa_K4103019 Homology Arm 3'AmyE 498
http://parts.igem.org/Part:BBa_K4103020 Homology Arm 5'ThrC 501
http://parts.igem.org/Part:BBa_K4103021 Homology Arm 3'ThrC 429

Composite Parts

Part Name Type Description Length (bp)
http://parts.igem.org/Part:BBa_K4103000 Plasmid pHT43_Pfu_sso7d 9484
http://parts.igem.org/Part:BBa_K4103006 Promoter + Insulator lacI+riboJ 1614
http://parts.igem.org/Part:BBa_K4103009 RBS_SecTag AmyQ 135
http://parts.igem.org/Part:BBa_K4103011 CDS Pfu_sso7d_2 2534
http://parts.igem.org/Part:BBa_K4103012 5' Tags TEV-GFP-10xHis_R5 C-Tag 865
http://parts.igem.org/Part:BBa_K4103022 Library Plasmid SecTag Library 1 6968
http://parts.igem.org/Part:BBa_K4103023 Library Plasmid SecTag Library 2 4962
http://parts.igem.org/Part:BBa_K4103024 Library Plasmid SecTag Library 3 4968
http://parts.igem.org/Part:BBa_K4103025 Library Plasmid SecTag Library 4 4879
http://parts.igem.org/Part:BBa_K4103026 Library Plasmid SecTag Library 5 4913
http://parts.igem.org/Part:BBa_K4103027 Library Plasmid SecTag Library 6 4868