Difference between revisions of "Team:Qdai/Experiments"

Line 6: Line 6:
 
   <link href="https://2021.igem.org/Template:Qdai/css/styleCSS?action=raw&amp;ctype=text/css" rel="stylesheet"/>
 
   <link href="https://2021.igem.org/Template:Qdai/css/styleCSS?action=raw&amp;ctype=text/css" rel="stylesheet"/>
 
   <link href="https://2021.igem.org/Template:Qdai/css/bootstrap-minCSS?action=raw&amp;ctype=text/css" rel="stylesheet"/>
 
   <link href="https://2021.igem.org/Template:Qdai/css/bootstrap-minCSS?action=raw&amp;ctype=text/css" rel="stylesheet"/>
<link href="https://2021.igem.org/Template:Qdai/css/g-fontsCSS?action=raw&amp;ctype=text/css" rel="stylesheet"/>
+
  <link href="https://2021.igem.org/Template:Qdai/css/g-fontsCSS?action=raw&amp;ctype=text/css" rel="stylesheet"/>
  
  
 
   <style>
 
   <style>
      .main > p > img{
+
    .main>img {
       height: 15vh;
+
       height: 25vh;
       }
+
       max-width: 100%;
 +
    }
 +
 
 
     #HQ_page p {
 
     #HQ_page p {
    font-family: "Arial",Helvetica,sans-serif;
+
      font-family: "Arial", Helvetica, sans-serif;
    font-size: 16px;
+
      font-size: 16px;
    text-align: justify;
+
      text-align: justify;
}
+
      margin: 12px 0 12px 0;
 +
    }
 +
 
 
     .tag {
 
     .tag {
 
       font-family: 'Gemunu Libre', sans-serif;
 
       font-family: 'Gemunu Libre', sans-serif;
Line 48: Line 52:
 
       margin-bottom: 12px;
 
       margin-bottom: 12px;
 
     }
 
     }
     #globalWrapper{
+
 
 +
     #globalWrapper {
 
       font-size: 100%;
 
       font-size: 100%;
 
       padding-bottom: 0px;
 
       padding-bottom: 0px;
 
     }
 
     }
   
+
 
     #mw-content-text>p{
+
     #mw-content-text>p {
 
       display: none;
 
       display: none;
  
 
     }
 
     }
   
+
 
  .mem-link:link, .mem-link:visited, .mem-link:hover, .mem-link:active {
+
    .mem-link:link,
    text-decoration:none;
+
    .mem-link:visited,
    color:#212529;
+
    .mem-link:hover,
}
+
    .mem-link:active {
     .bg{
+
      text-decoration: none;
 +
      color: #212529;
 +
    }
 +
 
 +
     .bg {
 
       background: url("https://static.igem.org/mediawiki/2021/c/c8/T--Qdai--img--member-top.jpg");
 
       background: url("https://static.igem.org/mediawiki/2021/c/c8/T--Qdai--img--member-top.jpg");
 
       height: 40vh;
 
       height: 40vh;
 
     }
 
     }
 +
 
     .CircleClip {
 
     .CircleClip {
  width:15vw;
+
      width: 15vw;
  height:15vw;
+
      height: 15vw;
}
+
    }
  .s-item{
+
 
    margin-right:2vw;
+
    .s-item {
  }
+
      margin-right: 2vw;
 +
    }
  
  
Line 103: Line 114:
 
     #bodyContent h2,
 
     #bodyContent h2,
 
     #bodyContent h3,
 
     #bodyContent h3,
     #bodyContent h4,
+
     #bodyContent p,
 
     #bodyContent h5 {
 
     #bodyContent h5 {
 
       margin-bottom: 0px;
 
       margin-bottom: 0px;
Line 116: Line 127:
 
     /* https://work.smarchal.com/twbscolor/ */
 
     /* https://work.smarchal.com/twbscolor/ */
 
     .navbar {
 
     .navbar {
  background-color: #98197f00;
+
      background-color: #98197f00;
}
+
    }
.navbar .navbar-brand {
+
  color: #edf2f4;
+
}
+
.navbar .navbar-brand:hover,
+
.navbar .navbar-brand:focus {
+
  color: #a697b8;
+
}
+
.navbar .navbar-text {
+
  color: #edf2f4;
+
}
+
.navbar .navbar-text a {
+
  color: #a697b8;
+
}
+
.navbar .navbar-text a:hover,
+
.navbar .navbar-text a:focus {
+
  color: #a697b8;
+
}
+
.navbar .navbar-nav .nav-link {
+
  color: #edf2f4;
+
  border-radius: .25rem;
+
  margin: 0 0.25em;
+
}
+
.navbar .navbar-nav .nav-link:not(.disabled):hover,
+
.navbar .navbar-nav .nav-link:not(.disabled):focus {
+
  color: #a697b8;
+
}
+
.navbar .navbar-nav .dropdown-menu {
+
  background-color: #151616b6;
+
  border-color: #8e44ad;
+
}
+
.navbar .navbar-nav .dropdown-menu .dropdown-item {
+
  color: #edf2f4;
+
}
+
.navbar .navbar-nav .dropdown-menu .dropdown-item:hover,
+
.navbar .navbar-nav .dropdown-menu .dropdown-item:focus,
+
.navbar .navbar-nav .dropdown-menu .dropdown-item.active {
+
  color: #a697b8;
+
  background-color: #8e44ad;
+
}
+
.navbar .navbar-nav .dropdown-menu .dropdown-divider {
+
  border-top-color: #8e44ad;
+
}
+
.navbar .navbar-nav .nav-item.active .nav-link,
+
.navbar .navbar-nav .nav-item.active .nav-link:hover,
+
.navbar .navbar-nav .nav-item.active .nav-link:focus,
+
.navbar .navbar-nav .nav-item.show .nav-link,
+
.navbar .navbar-nav .nav-item.show .nav-link:hover,
+
.navbar .navbar-nav .nav-item.show .nav-link:focus {
+
  color: #a697b8;
+
  background-color: #8e44ad;
+
}
+
.navbar .navbar-toggler {
+
  border-color: #8e44ad;
+
}
+
.navbar .navbar-toggler:hover,
+
.navbar .navbar-toggler:focus {
+
  background-color: #8e44ad;
+
}
+
.navbar .navbar-toggler .navbar-toggler-icon {
+
  color: #edf2f4;
+
}
+
.navbar .navbar-collapse,
+
.navbar .navbar-form {
+
  border-color: #edf2f4;
+
}
+
.navbar .navbar-link {
+
  color: #edf2f4;
+
}
+
.navbar .navbar-link:hover {
+
  color: #a697b8;
+
}
+
  
@media (max-width: 575px) {
+
    .navbar .navbar-brand {
  .navbar-expand-sm .navbar-nav .show .dropdown-menu .dropdown-item {
+
      color: #edf2f4;
    color: #edf2f4;
+
     }
  }
+
  .navbar-expand-sm .navbar-nav .show .dropdown-menu .dropdown-item:hover,
+
  .navbar-expand-sm .navbar-nav .show .dropdown-menu .dropdown-item:focus {
+
     color: #a697b8;
+
  }
+
  .navbar-expand-sm .navbar-nav .show .dropdown-menu .dropdown-item.active {
+
    color: #a697b8;
+
    background-color: #8e44ad;
+
  }
+
}
+
  
@media (max-width: 767px) {
+
     .navbar .navbar-brand:hover,
  .navbar-expand-md .navbar-nav .show .dropdown-menu .dropdown-item {
+
    .navbar .navbar-brand:focus {
     color: #edf2f4;
+
      color: #a697b8;
  }
+
     }
  .navbar-expand-md .navbar-nav .show .dropdown-menu .dropdown-item:hover,
+
  .navbar-expand-md .navbar-nav .show .dropdown-menu .dropdown-item:focus {
+
    color: #a697b8;
+
  }
+
  .navbar-expand-md .navbar-nav .show .dropdown-menu .dropdown-item.active {
+
     color: #a697b8;
+
    background-color: #8e44ad;
+
  }
+
}
+
  
@media (max-width: 991px) {
+
    .navbar .navbar-text {
  .navbar-expand-lg .navbar-nav .show .dropdown-menu .dropdown-item {
+
      color: #edf2f4;
    color: #edf2f4;
+
     }
  }
+
  .navbar-expand-lg .navbar-nav .show .dropdown-menu .dropdown-item:hover,
+
  .navbar-expand-lg .navbar-nav .show .dropdown-menu .dropdown-item:focus {
+
     color: #a697b8;
+
  }
+
  .navbar-expand-lg .navbar-nav .show .dropdown-menu .dropdown-item.active {
+
    color: #a697b8;
+
    background-color: #8e44ad;
+
  }
+
}
+
  
@media (max-width: 1199px) {
+
     .navbar .navbar-text a {
  .navbar-expand-xl .navbar-nav .show .dropdown-menu .dropdown-item {
+
      color: #a697b8;
     color: #edf2f4;
+
     }
  }
+
  .navbar-expand-xl .navbar-nav .show .dropdown-menu .dropdown-item:hover,
+
  .navbar-expand-xl .navbar-nav .show .dropdown-menu .dropdown-item:focus {
+
    color: #a697b8;
+
  }
+
  .navbar-expand-xl .navbar-nav .show .dropdown-menu .dropdown-item.active {
+
     color: #a697b8;
+
    background-color: #8e44ad;
+
  }
+
}
+
  
.navbar-expand .navbar-nav .show .dropdown-menu .dropdown-item {
+
    .navbar .navbar-text a:hover,
  color: #edf2f4;
+
    .navbar .navbar-text a:focus {
}
+
      color: #a697b8;
.navbar-expand .navbar-nav .show .dropdown-menu .dropdown-item:hover,
+
    }
.navbar-expand .navbar-nav .show .dropdown-menu .dropdown-item:focus {
+
  color: #a697b8;
+
}
+
.navbar-expand .navbar-nav .show .dropdown-menu .dropdown-item.active {
+
  color: #a697b8;
+
  background-color: #8e44ad;
+
}
+
  
footer.nb-footer {
+
    .navbar .navbar-nav .nav-link {
background: #222;
+
      color: #edf2f4;
border-top: 4px solid #8e44ad; }
+
      border-radius: .25rem;
footer.nb-footer .about {
+
      margin: 0 0.25em;
margin: 0 auto;
+
    }
margin-top: 40px;
+
max-width: 1170px;
+
text-align: center; }
+
footer.nb-footer .about p {
+
font-size: 13px;
+
color: #999;
+
margin-top: 30px; }
+
footer.nb-footer .about .social-media {
+
margin-top: 15px; }
+
footer.nb-footer .about .social-media ul li a {
+
display: inline-block;
+
width: 45px;
+
height: 45px;
+
line-height: 45px;
+
border-radius: 50%;
+
font-size: 16px;
+
color: #9a24c2;
+
border: 1px solid rgba(255, 255, 255, 0.3); }
+
footer.nb-footer .about .social-media ul li a:hover {
+
background: #8e44ad;
+
color: #fff;
+
border-color: #8e44ad; }
+
footer.nb-footer .footer-info-single {
+
margin-top: 30px; }
+
footer.nb-footer .footer-info-single .title {
+
color: #aaa;
+
text-transform: uppercase;
+
font-size: 16px;
+
border-left: 4px solid #8e44ad;
+
padding-left: 5px; }
+
footer.nb-footer .footer-info-single ul li a {
+
display: block;
+
color: #aaa;
+
padding: 2px 0; }
+
footer.nb-footer .footer-info-single ul li a:hover {
+
color: #8e44ad; }
+
footer.nb-footer .footer-info-single p {
+
font-size: 13px;
+
line-height: 20px;
+
color: #aaa; }
+
footer.nb-footer .copyright {
+
margin-top: 15px;
+
background: #111;
+
padding: 7px 0;
+
color: #999; }
+
footer.nb-footer .copyright p {
+
margin: 0;
+
padding: 0; }
+
div[class="footer-info-single"]>ul{
+
  margin: 0;
+
}
+
div[class="footer-info-single"]>h2{
+
  padding-bottom: 0;
+
  padding-top: 0;
+
  
  margin-bottom: .5rem;
+
    .navbar .navbar-nav .nav-link:not(.disabled):hover,
}
+
    .navbar .navbar-nav .nav-link:not(.disabled):focus {
 +
      color: #a697b8;
 +
    }
 +
 
 +
    .navbar .navbar-nav .dropdown-menu {
 +
      background-color: #151616b6;
 +
      border-color: #8e44ad;
 +
    }
 +
 
 +
    .navbar .navbar-nav .dropdown-menu .dropdown-item {
 +
      color: #edf2f4;
 +
    }
 +
 
 +
    .navbar .navbar-nav .dropdown-menu .dropdown-item:hover,
 +
    .navbar .navbar-nav .dropdown-menu .dropdown-item:focus,
 +
    .navbar .navbar-nav .dropdown-menu .dropdown-item.active {
 +
      color: #a697b8;
 +
      background-color: #8e44ad;
 +
    }
 +
 
 +
    .navbar .navbar-nav .dropdown-menu .dropdown-divider {
 +
      border-top-color: #8e44ad;
 +
    }
 +
 
 +
    .navbar .navbar-nav .nav-item.active .nav-link,
 +
    .navbar .navbar-nav .nav-item.active .nav-link:hover,
 +
    .navbar .navbar-nav .nav-item.active .nav-link:focus,
 +
    .navbar .navbar-nav .nav-item.show .nav-link,
 +
    .navbar .navbar-nav .nav-item.show .nav-link:hover,
 +
    .navbar .navbar-nav .nav-item.show .nav-link:focus {
 +
      color: #a697b8;
 +
      background-color: #8e44ad;
 +
    }
 +
 
 +
    .navbar .navbar-toggler {
 +
      border-color: #8e44ad;
 +
    }
 +
 
 +
    .navbar .navbar-toggler:hover,
 +
    .navbar .navbar-toggler:focus {
 +
      background-color: #8e44ad;
 +
    }
 +
 
 +
    .navbar .navbar-toggler .navbar-toggler-icon {
 +
      color: #edf2f4;
 +
    }
 +
 
 +
    .navbar .navbar-collapse,
 +
    .navbar .navbar-form {
 +
      border-color: #edf2f4;
 +
    }
 +
 
 +
    .navbar .navbar-link {
 +
      color: #edf2f4;
 +
    }
 +
 
 +
    .navbar .navbar-link:hover {
 +
      color: #a697b8;
 +
    }
 +
 
 +
    @media (max-width: 575px) {
 +
      .navbar-expand-sm .navbar-nav .show .dropdown-menu .dropdown-item {
 +
        color: #edf2f4;
 +
      }
 +
 
 +
      .navbar-expand-sm .navbar-nav .show .dropdown-menu .dropdown-item:hover,
 +
      .navbar-expand-sm .navbar-nav .show .dropdown-menu .dropdown-item:focus {
 +
        color: #a697b8;
 +
      }
 +
 
 +
      .navbar-expand-sm .navbar-nav .show .dropdown-menu .dropdown-item.active {
 +
        color: #a697b8;
 +
        background-color: #8e44ad;
 +
      }
 +
    }
 +
 
 +
    @media (max-width: 767px) {
 +
      .navbar-expand-md .navbar-nav .show .dropdown-menu .dropdown-item {
 +
        color: #edf2f4;
 +
      }
 +
 
 +
      .navbar-expand-md .navbar-nav .show .dropdown-menu .dropdown-item:hover,
 +
      .navbar-expand-md .navbar-nav .show .dropdown-menu .dropdown-item:focus {
 +
        color: #a697b8;
 +
      }
 +
 
 +
      .navbar-expand-md .navbar-nav .show .dropdown-menu .dropdown-item.active {
 +
        color: #a697b8;
 +
        background-color: #8e44ad;
 +
      }
 +
    }
 +
 
 +
    @media (max-width: 991px) {
 +
      .navbar-expand-lg .navbar-nav .show .dropdown-menu .dropdown-item {
 +
        color: #edf2f4;
 +
      }
 +
 
 +
      .navbar-expand-lg .navbar-nav .show .dropdown-menu .dropdown-item:hover,
 +
      .navbar-expand-lg .navbar-nav .show .dropdown-menu .dropdown-item:focus {
 +
        color: #a697b8;
 +
      }
 +
 
 +
      .navbar-expand-lg .navbar-nav .show .dropdown-menu .dropdown-item.active {
 +
        color: #a697b8;
 +
        background-color: #8e44ad;
 +
      }
 +
    }
 +
 
 +
    @media (max-width: 1199px) {
 +
      .navbar-expand-xl .navbar-nav .show .dropdown-menu .dropdown-item {
 +
        color: #edf2f4;
 +
      }
 +
 
 +
      .navbar-expand-xl .navbar-nav .show .dropdown-menu .dropdown-item:hover,
 +
      .navbar-expand-xl .navbar-nav .show .dropdown-menu .dropdown-item:focus {
 +
        color: #a697b8;
 +
      }
 +
 
 +
      .navbar-expand-xl .navbar-nav .show .dropdown-menu .dropdown-item.active {
 +
        color: #a697b8;
 +
        background-color: #8e44ad;
 +
      }
 +
    }
 +
 
 +
    .navbar-expand .navbar-nav .show .dropdown-menu .dropdown-item {
 +
      color: #edf2f4;
 +
    }
 +
 
 +
    .navbar-expand .navbar-nav .show .dropdown-menu .dropdown-item:hover,
 +
    .navbar-expand .navbar-nav .show .dropdown-menu .dropdown-item:focus {
 +
      color: #a697b8;
 +
    }
 +
 
 +
    .navbar-expand .navbar-nav .show .dropdown-menu .dropdown-item.active {
 +
      color: #a697b8;
 +
      background-color: #8e44ad;
 +
    }
 +
 
 +
    footer.nb-footer {
 +
      background: #222;
 +
      border-top: 4px solid #8e44ad;
 +
    }
 +
 
 +
    footer.nb-footer .about {
 +
      margin: 0 auto;
 +
      margin-top: 40px;
 +
      max-width: 1170px;
 +
      text-align: center;
 +
    }
 +
 
 +
    footer.nb-footer .about p {
 +
      font-size: 13px;
 +
      color: #999;
 +
      margin-top: 30px;
 +
    }
 +
 
 +
    footer.nb-footer .about .social-media {
 +
      margin-top: 15px;
 +
    }
 +
 
 +
    footer.nb-footer .about .social-media ul li a {
 +
      display: inline-block;
 +
      width: 45px;
 +
      height: 45px;
 +
      line-height: 45px;
 +
      border-radius: 50%;
 +
      font-size: 16px;
 +
      color: #9a24c2;
 +
      border: 1px solid rgba(255, 255, 255, 0.3);
 +
    }
 +
 
 +
    footer.nb-footer .about .social-media ul li a:hover {
 +
      background: #8e44ad;
 +
      color: #fff;
 +
      border-color: #8e44ad;
 +
    }
 +
 
 +
    footer.nb-footer .footer-info-single {
 +
      margin-top: 30px;
 +
    }
 +
 
 +
    footer.nb-footer .footer-info-single .title {
 +
      color: #aaa;
 +
      text-transform: uppercase;
 +
      font-size: 16px;
 +
      border-left: 4px solid #8e44ad;
 +
      padding-left: 5px;
 +
    }
 +
 
 +
    footer.nb-footer .footer-info-single ul li a {
 +
      display: block;
 +
      color: #aaa;
 +
      padding: 2px 0;
 +
    }
 +
 
 +
    footer.nb-footer .footer-info-single ul li a:hover {
 +
      color: #8e44ad;
 +
    }
 +
 
 +
    footer.nb-footer .footer-info-single p {
 +
      font-size: 13px;
 +
      line-height: 20px;
 +
      color: #aaa;
 +
    }
 +
 
 +
    footer.nb-footer .copyright {
 +
      margin-top: 15px;
 +
      background: #111;
 +
      padding: 7px 0;
 +
      color: #999;
 +
    }
 +
 
 +
    footer.nb-footer .copyright p {
 +
      margin: 0;
 +
      padding: 0;
 +
    }
 +
 
 +
    div[class="footer-info-single"]>ul {
 +
      margin: 0;
 +
    }
 +
 
 +
    div[class="footer-info-single"]>h2 {
 +
      padding-bottom: 0;
 +
      padding-top: 0;
 +
 
 +
      margin-bottom: .5rem;
 +
    }
 
   </style>
 
   </style>
 
</head>
 
</head>
Line 378: Line 444:
 
             <a class="dropdown-item" href="https://2021.igem.org/Team:Qdai/Partnership">Partnership</a>
 
             <a class="dropdown-item" href="https://2021.igem.org/Team:Qdai/Partnership">Partnership</a>
 
    
 
    
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     <div class="container-vcenter">
 
     <div class="container-vcenter">
 
       <h2 class="tag"><span>Experiments</span></h2>
 
       <h2 class="tag"><span>Experiments</span></h2>
 +
      <embed src="https://static.igem.org/mediawiki/2021/a/a6/T--Qdai--img--Experiments.docx.pdf" style="height: 100vh;" type="application/pdf" width="80%"/>
  
      <div class="main" style="width: 60%;margin-bottom: 8vh;">
+
 
        <h2 class="sub">Preparation of TE Buffer
+
        </h2>
+
        <p>Materials <br/>
+
          ・Tris-HCl: 2ml <br/>
+
          ・EDTA: 0.5ml <br/>
+
          ・dH2O: 197.5ml <br/>
+
          Protocol <br/>
+
          1. Mix the above materials. <br/>
+
          2. Place the mixture in a medium bottle and cover with aluminum foil <br/>
+
          3. Autoclave. Following autoclave, store it at room temperature.
+
          </p>
+
        <h2 class="sub">Preparation of LB medium</h2>
+
        <p>
+
          Materials <br/>
+
          ・Tryptone: 10g <br/>
+
          ・Yeast Extract: 5g <br/>
+
          ・NaCl: 5g <br/>
+
          ・dH2O: 1000ml <br/>
+
          Protocol <br/>
+
          1. Put the above materials into a beaker, cover with aluminum foil, and mix with a stirrer. <br/>
+
          2. Autoclave. Following autoclave, store it in a medium bottle at 4 ℃.
+
          </p>
+
        <h2 class="sub">Preparation of Ampicillin
+
        </h2>
+
        <p>Materials <br/>
+
          ・Ampicillin sodium salt: 0.5g <br/>
+
          ・Sterile water: 5ml <br/>
+
          Protocol <br/>
+
          1. Mix the above materials and vortex. <br/>
+
          2. Filter the mixture through a syringe filter. <br/>
+
          3. Dispense the amount to be used into a tube and store at -20 ℃. (If you use 50% ethanol instead of sterile water, you do not need to dispense.)
+
          </p>
+
        <h2 class="sub">Preparation of LB Agar Plates
+
        </h2>
+
        <p>Materials <br/>
+
          ・Tryptone: 4g <br/>
+
          ・Yeast Extract: 2g <br/>
+
          ・NaCl: 2g <br/>
+
          ・Agar (not agarose): 6g <br/>
+
          ・Antibiotic (ampicillin): 400㎕ <br/>
+
          ・dH2O: 400ml <br/>
+
          Protocol <br/>
+
          1. Put Tryptone, Yeast Extract, NaCl, and dH2O into a beaker, cover with aluminum foil, and mix with a stirrer. <br/>
+
          2. Add agar and autoclave. <br/>
+
          3. Mix with a stirrer. <br/>
+
          4. When the solution cools to about 60 ℃, add ampicillin and mix. <br/>
+
          5. Transfer the mixture to a Petri dish on a clean bench. When the agar has set, stack the Petri dishes, cover them with plastic wrap, and store them at 4 ℃.
+
          </p>
+
          <h2 class="sub">Resuspending gBlocks® Gene Fragments (IDT)
+
          </h2>
+
          <p>Materials <br/>
+
            ・DNA <br/>
+
            ・TE Buffer <br/>
+
           
+
            Protocol <br/>
+
            1. Prior to opening, centrifuge the tube at a minimum of 3000×g to ensure that the material is at the bottom of the tube <br/>
+
            2. Add TE to reach a final concentration of 10ng/㎕. <br/>
+
            3. Vortex briefly <br/>
+
            4. Incubate at 50 ℃ for 20 minutes. <br/>
+
            5. Briefly vortex and centrifuge.
+
            </p>
+
          <h2 class="sub">Gibson Assembly (NEB)
+
          </h2>
+
          <p>Materials <br/>
+
            ・DNA <br/>
+
            ・Gibson Assembly® Master Mix (E2611) <br/>
+
            ・Sterile water <br/>
+
            Protocol <br/>
+
            1. Determine the amount of each material according to the table below. <br/>
+
            <img alt="" src="https://static.igem.org/mediawiki/2021/2/27/T--Qdai--img--exp--1.png"/> <br/>
+
           
+
       
+
           
+
            2. Add sterile water, DNA, and Gibson Assembly Master Mix to the microtube in that order. <br/>
+
            3. Incubate samples in a thermocycler at 50 ℃ for 15 minutes when 2 or 3 fragments are being assembled or 60 minutes when 4-6 fragments are being assembled. Following incubation, store samples at -20 ℃.
+
            </p>
+
          <h2 class="sub">DNA purification
+
          </h2>
+
          <p>Materials <br/>
+
            ・DNA <br/>
+
            ・Wizard SV® Gel and PCR Clean-up System (Promega) <br/>
+
            Protocol <br/>
+
            1. Add an equal volume of Membrane Binding Solution to DNA. <br/>
+
            2. Insert SV Minicolumn into Collection Tube. <br/>
+
            3. Transfer DNA to the Minicolumn assembly. Incubate at room temperature for 1 minute. <br/>
+
            4. Centrifuge at 16,000 × g for 1 minute. Discard flowthrough and reinsert Minicolumn into Collection Tube. <br/>
+
            5. Add 700㎕ Membrane Wash Solution (ethanol added). Centrifuge at 16,000 × g for 1 minute. Discard flowthrough and reinsert Minicolumn into Collection Tube. <br/>
+
            6. Repeat Step 5 with 500㎕ Membrane Wash Solution. Centrifuge at 16,000 × g for 5 minutes. <br/>
+
            7. Empty the Collection Tube and recentrifuge the column assembly for 1 minute with the microcentrifuge lid open (or off) to allow evaporation of any residual ethanol. <br/>
+
            8. Carefully transfer Minicolumn to a clean 1.5ml microcentrifuge tube. <br/>
+
            9. Add 50㎕ of Nuclease-Free Water to the Minicolumn. Incubate at room temperature for 1 minute. Centrifuge at 16,000 × g for 1 minute. <br/>
+
            10. Discard Minicolumn and store DNA at 4℃ or –20℃.
+
            </p>
+
          <h2 class="sub">Dilution of TAE Buffer (10×)
+
          </h2>
+
          <p>Materials <br/>
+
            ・TAE Buffer(10×): 100ml <br/>
+
            ・MiliQ: 900ml <br/>
+
            Protocol <br/>
+
            1. Mix the above materials and store them in a medium bottle at room temperature.
+
            </p>
+
          <h2 class="sub">Preparation of agarose gel
+
          </h2>
+
        <p>Materials <br/>
+
          ・TAE Buffer: 20ml <br/>
+
          ・Agarose: 0.2㎕ <br/>
+
          ・Midori Green: 1㎕ <br/>
+
          Protocol <br/>
+
          1. Put TAE Buffer and Agarose in a beaker and cover with plastic wrap. <br/>
+
          2. Melt the Agarose in a microwave oven. <br/>
+
          3. When the solution is cool enough not to be hot to the touch, add the Midori Green. <br/>
+
          4. Pour the gel into the casting stand and set the comb. <br/>
+
          5. When the gel hardens, cover with plastic wrap and store at 4 ℃.
+
          </p>
+
        <h2 class="sub">Agarose Gel Electrophoresis
+
        </h2>
+
      <p>Materials <br/>
+
        ・DNA: 1㎕ of each <br/>
+
        ・DNA Ladder: 5㎕ <br/>
+
        ・Loading Dye (6×): 1㎕×(n+1) <br/>
+
        ・Sterile water: 4㎕×n <br/>
+
        ・TAE Buffer <br/>
+
        (n: Number of samples) <br/>
+
        Protocol <br/>
+
        1. Add sterile water4㎕, Loading Dye (6×)1㎕, and DNA1㎕to the PCR tube. <br/>
+
        2. Add DNA Ladder5㎕ and Loading Dye (6×)1㎕to the PCR tube. <br/>
+
        3. Place the agarose gel into the gel box. <br/>
+
        4. Fill the gel box with TAE Buffer until the gel is covered. <br/>
+
        5. Loading the samples. <br/>
+
        6. Run the gel at 100V for 15-25 minutes. <br/>
+
        7. Check the bands by UV irradiation.
+
        </p>
+
      <h2 class="sub">Digestion</h2>
+
      <p>Materials <br/>
+
        ・Restriction enzyme <br/>
+
        (EcoRⅠ-HF, HindⅢ) <br/>
+
        ・NEB Buffer r2.1 (10×) <br/>
+
        ・DNA <br/>
+
        ・Sterile water <br/>
+
        Protocol <br/>
+
        1. Determine the amount of each material according to the table below. <br/>
+
        <img alt="" src="https://static.igem.org/mediawiki/2021/0/0d/T--Qdai--img--exp--2.png"/> <br/>
+
       
+
       
+
       
+
       
+
        2. Add sterile water, Buffer, restriction enzyme, and DNA to the microtube in that order. <br/>
+
        3. Incubate samples in a thermocycler at 37 ℃ for 1 hour. Following incubation, store samples at -20 ℃.
+
        </p>
+
      <h2 class="sub">Ligation
+
      </h2>
+
      <p>Materials <br/>
+
        ・Ligation Mix: 3㎕ <br/>
+
        ・Sterile water: 18㎕ <br/>
+
        ・DNA <br/>
+
       
+
        Protocol <br/>
+
        1. Prepare Mighty Mix by mixing Ligation Mix and sterile water. <br/>
+
        2. Determine the amount of each material according to the table below. <br/>
+
        <img alt="" src="https://static.igem.org/mediawiki/2021/1/18/T--Qdai--img--exp--3.png" style="height: 10vh;"/> <br/>
+
       
+
       
+
       
+
       
+
       
+
       
+
        3. Add vector, insert, and Mighty Mix to the microtube. (For negative controls, add TE Buffer instead of Insert.) <br/>
+
        4. Incubate samples in a thermocycler at 16 ℃ for 30 minutes. Following incubation, store samples at -20 ℃.
+
        </p>
+
      <h2 class="sub">Transformation
+
      </h2>
+
      <p>Materials <br/>
+
        ・Plasmid: 6㎕ of each (Recombinant plasmid and Negative Control) <br/>
+
        ・Competent cells: 50㎕ ×n <br/>
+
        ・SOC medium (or LB medium) 1ml×n <br/>
+
        ・LB Agar Plates: 2 Plates ×n <br/>
+
        (n: Number of samples) <br/>
+
        Protocol <br/>
+
        1. Add plasmid and competent cells to the microtubes. <br/>
+
        2. Place the microtubes on ice for 30 minutes. <br/>
+
        3. Heat shock at 42 ℃ for 45 seconds <br/>
+
        4. Add SOC medium to the microtubes. <br/>
+
        5. Place the microtubes at 37 ℃ for 30 minutes. <br/>
+
        6. Spread 100㎕ onto the plate. <br/>
+
        7. Centrifuge the rest of the mixture at 27°C, 3000 rpm for 1 minute. <br/>
+
        8. Discard about 700㎕ of the supernatant. <br/>
+
        9. Dissolve the precipitate by pipetting slowly and spread 200㎕ onto the plate. <br/>
+
        10. Incubate at 37℃ for 14~18 hours. Following incubation, cover samples in plastic wrap and store them at 4 ℃.
+
        </p>
+
      <h2 class="sub">Inoculation</h2>
+
      <p>Materials <br/>
+
        ・LB medium: 3ml×n <br/>
+
        ・Antibiotic (ampicillin): 3㎕×n <br/>
+
        ・LB Agar Plates with colony <br/>
+
        (n: Number of samples) <br/>
+
        Protocol <br/>
+
        1. Mix LB medium and ampicillin. <br/>
+
        2. Dispense 3ml into each culture tube. <br/>
+
        3. Pick the colonies from LB Agar Plates using a yellow tip and eject them into a culture tube. <br/>
+
        4. Incubate at 37 ℃ for 12~16 hours in a shaking incubator.
+
        </p>
+
      <h2 class="sub">Miniprep (Promega)
+
      </h2>
+
      <p>Materials <br/>
+
        ・Bacterial culture 2.4ml×n <br/>
+
        ・PureYieldTM Plasmid Miniprep System <br/>
+
        (n: Number of samples) <br/>
+
        Protocol <br/>
+
        1. Centrifuge 1.2ml of bacterial culture for 30 seconds at maximum speed in a microcentrifuge. <br/>
+
        2. Discard the supernatant. <br/>
+
        3. Add an additional 1.2ml of bacterial culture to the same tube. Repeat Steps 1 and 2. <br/>
+
        4. Add 600㎕ of TE buffer or water to the cell pellet, and resuspend completely. <br/>
+
        5. Add 100㎕ of Cell Lysis Buffer (Blue), and mix by inverting the tube 6 times. <br/>
+
        6. Add 350㎕ of cold (4–8°C) Neutralization Solution, and mix thoroughly by inverting. <br/>
+
        7. Centrifuge at maximum speed in a microcentrifuge for 3 minutes. <br/>
+
        8. Transfer the supernatant (~900㎕) to a PureYield™ Minicolumn without disturbing the cell debris pellet. <br/>
+
        9. Place the minicolumn into a Collection Tube, and centrifuge at maximum speed in a microcentrifuge for 15 seconds. <br/>
+
        10. Discard the flowthrough, and place the minicolumn into the same Collection Tube. <br/>
+
        11. Add 200㎕ of Endotoxin Removal Wash (ERB) to the minicolumn. Centrifuge at maximum speed in a microcentrifuge for 15 seconds. <br/>
+
        12. Add 400㎕ of Column Wash Solution (CWC) to the minicolumn. Centrifuge at maximum speed in a microcentrifuge for 30 seconds. <br/>
+
        13. Transfer the minicolumn to a clean 1.5ml microcentrifuge tube, then add 30㎕ of Elution Buffer or nuclease-free water directly to the minicolumn matrix. Let stand for 1 minute at room temperature. <br/>
+
        14. Centrifuge for 15 seconds to elute the plasmid DNA. Cap the microcentrifuge tube, and store eluted plasmid DNA at –20 ℃.
+
        </p>
+
      <h2 class="sub">Measurement of DNA concentration (NanoDrop)
+
      </h2>
+
      <p>Materials <br/>
+
        ・DNA 1.5㎕ <br/>
+
        ・Buffer 1.5㎕ <br/>
+
        Protocol <br/>
+
        1. Start nanodrop2000 <br/>
+
        2. Perform calibration and blank measurement by entering one drop of 1.5㎕ buffer. <br/>
+
        3. Clean the surface of the NanoDrop with KimWipes. <br/>
+
        4. place 1.5㎕ per sample on the NanoDrop and measure the concentration.
+
        </p>
+
      </div>
+
 
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Experiments