Difference between revisions of "Team:SUNY Oneonta"

 
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<!-- # TODO: #6 Fix table caption font--><!-- # TODO: #7 Fix citations links font size--><html lang="en"><head><meta charset="utf-8"/><meta content="width=device-width,initial-scale=1" name="viewport"/><title>SNflaPs</title><link href="https://2021.igem.org/Template:SUNY_Oneonta/css/indexCSS?action=raw&amp;ctype=text/css" rel="stylesheet"/></head><body><!-- # TODO: #6 Fix table caption font--><!-- # TODO: #7 Fix citations links font size--><nav class="navbar navbar-expand-xl fixed-top"><div class="container d-flex justify-content-between"><a class="navbar-brand d-lg-inline-block" href="https://2021.igem.org/Team:SUNY_Oneonta"><h2>SNflaPs</h2></a><button aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation" class="navbar-toggler" data-target="#navbarNav" data-toggle="collapse" type="button"><span class="navbar-toggler-icon"></span></button><div class="collapse navbar-collapse" id="navbarNav"><ul class="navbar-nav ml-auto"><li class="nav-item dropdown"><a 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dropdown"><a aria-expanded="false" aria-haspopup="true" class="nav-link dropdown-toggle" data-toggle="dropdown" href="#" id="navbarJudgingDropdown" role="button">Judging</a><div aria-labelledby="navbarJudgingDropdown" class="dropdown-menu"><a class="dropdown-item" href="https://2021.igem.org/Team:SUNY_Oneonta/Part_Collection">Parts</a><a class="dropdown-item" href="https://2021.igem.org/Team:SUNY_Oneonta/Implementation">Implementation</a><a class="dropdown-item" href="https://2021.igem.org/Team:SUNY_Oneonta/Engineering">Engineering</a><a class="dropdown-item" href="https://2021.igem.org/Team:SUNY_Oneonta/Contribution">Contributions</a><a class="dropdown-item" href="https://2021.igem.org/Team:SUNY_Oneonta/Judging">Medal Criteria</a></div></li><li class="nav-item dropdown"><a aria-expanded="false" aria-haspopup="true" class="nav-link dropdown-toggle" data-toggle="dropdown" href="#" id="navbarHuman PracticesDropdown" role="button">Human Practices</a><div aria-labelledby="navbarHuman PracticesDropdown" class="dropdown-menu"><a class="dropdown-item" href="https://2021.igem.org/Team:SUNY_Oneonta/Human_Practices">Engaging Stakeholders</a><a class="dropdown-item" href="https://2021.igem.org/Team:SUNY_Oneonta/Collaborations">Collaborations</a><a class="dropdown-item" href="https://2021.igem.org/Team:SUNY_Oneonta/Communication">Educational Outreach</a></div></li><li class="nav-item dropdown"><a aria-expanded="false" aria-haspopup="true" class="nav-link dropdown-toggle" data-toggle="dropdown" href="#" id="navbarTeamDropdown" role="button">Team</a><div aria-labelledby="navbarTeamDropdown" class="dropdown-menu"><a class="dropdown-item" href="https://2021.igem.org/Team:SUNY_Oneonta/Team">Team</a><a class="dropdown-item" href="https://2021.igem.org/Team:SUNY_Oneonta/Attributions">Attributions</a><a class="dropdown-item" href="https://2021.igem.org/Team:SUNY_Oneonta/Sponsors">Sponsors</a></div></li><li class="nav-item dropdown"><a aria-expanded="false" aria-haspopup="true" class="nav-link dropdown-toggle" data-toggle="dropdown" href="#" id="navbarLab NotebookDropdown" role="button">Lab Notebook</a><div aria-labelledby="navbarLab NotebookDropdown" class="dropdown-menu"><a class="dropdown-item" href="https://2021.igem.org/Team:SUNY_Oneonta/Protocols">Protocols</a><a class="dropdown-item" href="https://2021.igem.org/Team:SUNY_Oneonta/Daily_Log">Daily Log</a><a class="dropdown-item" href="https://2021.igem.org/Team:SUNY_Oneonta/Safety">Safety</a></div></li></ul></div></div></nav><header class="d-flex justify-content-center align-items-center"><div class="container"><center><div class="image"><img alt="SUNY Oneonta iGEM Logo" src="https://static.igem.org/mediawiki/2021/8/86/T--SUNY_Oneonta--img--SNflaPs_Logo.png" style="width: 30%"/></div><p class="lead">SNflaPs (SNP Flappase)</p><hr class="my-4"/><p><the>2021 SUNY Oneonta iGEM Team’s project SNflaPs is an extension of Ca2LF, in which the goal was to develop a field deployable genetic testing system to detect the presence of the A2 allele of the beta casein (CSN2) gene. SNflaPs further explores the extent to which our method is effective in detecting single nucleotide polymorphisms (SNPs). Inspired by the needs of local farmers, the goal of this project is to demonstrate that a detection panel of SNP caused diseases is a feasible one. This is done by amplifying genomic DNA through recombinase polymerase amplification (RPA) and employing a 5’ flap endonuclease (Flappase) that cleaves Holliday junctions created by designed oligonucleotides with flurophore tagged ends.</the></p><a class="btn btn-primary btn-lg" href="https://2021.igem.org/Team:SUNY_Oneonta/Description" role="button">Read more</a></center></div></header><footer><div class="container"><p>Email: <a href="mailto:igem@oneonta.edu">iGEM@oneonta.edu</a> | <a href="https://suny.oneonta.edu/igem">suny.oneonta.edu/iGEM</a></p></div></footer><script src="https://2021.igem.org/Template:SUNY_Oneonta/index-bundleJS?action=raw&amp;ctype=text/javascript"></script></body></html>
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<!-- # TODO: #6 Fix table caption font--><!-- # TODO: #7 Fix citations links font size--><html lang="en"><head><meta charset="utf-8"/><meta content="width=device-width,initial-scale=1" name="viewport"/><title>SNflaPs</title><link href="https://2021.igem.org/Template:SUNY_Oneonta/css/indexCSS?action=raw&amp;ctype=text/css" rel="stylesheet"/></head><body><!-- # TODO: #6 Fix table caption font--><!-- # TODO: #7 Fix citations links font size--><nav class="navbar navbar-expand-xl fixed-top"><div class="container d-flex justify-content-between"><a class="navbar-brand d-lg-inline-block" href="https://2021.igem.org/Team:SUNY_Oneonta"><h2>SNflaPs</h2></a><button aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation" class="navbar-toggler" data-target="#navbarNav" data-toggle="collapse" type="button"><span class="navbar-toggler-icon"></span></button><div class="collapse navbar-collapse" id="navbarNav"><ul class="navbar-nav ml-auto"><li class="nav-item dropdown"><a aria-expanded="false" aria-haspopup="true" class="nav-link dropdown-toggle" data-toggle="dropdown" href="#" id="navbarProject InspirationDropdown" role="button">Project Inspiration</a><div aria-labelledby="navbarProject InspirationDropdown" class="dropdown-menu"><a class="dropdown-item" href="https://2021.igem.org/Team:SUNY_Oneonta/Inspiration">Inspiration</a><a class="dropdown-item" href="https://2021.igem.org/Team:SUNY_Oneonta/Promo_Video">Promotional Video</a><a class="dropdown-item" href="https://2021.igem.org/Team:SUNY_Oneonta/Presentation">Presentation</a></div></li><li class="nav-item dropdown"><a aria-expanded="false" aria-haspopup="true" class="nav-link dropdown-toggle" data-toggle="dropdown" href="#" id="navbarProjectDropdown" role="button">Project</a><div aria-labelledby="navbarProjectDropdown" class="dropdown-menu"><a class="dropdown-item" href="https://2021.igem.org/Team:SUNY_Oneonta/Description">Overview</a><a class="dropdown-item" href="https://2021.igem.org/Team:SUNY_Oneonta/Sample_Prep">Sample Preparation</a><a class="dropdown-item" href="https://2021.igem.org/Team:SUNY_Oneonta/Detection">Detection</a><a class="dropdown-item" href="https://2021.igem.org/Team:SUNY_Oneonta/Model">Modeling</a><a class="dropdown-item" href="https://2021.igem.org/Team:SUNY_Oneonta/Proof_Of_Concept">Proof-of-Concept</a></div></li><li class="nav-item dropdown"><a aria-expanded="false" aria-haspopup="true" class="nav-link dropdown-toggle" data-toggle="dropdown" href="#" id="navbarHardware/SoftwareDropdown" role="button">Hardware/Software</a><div aria-labelledby="navbarHardware/SoftwareDropdown" class="dropdown-menu"><a class="dropdown-item" href="https://2021.igem.org/Team:SUNY_Oneonta/Hardware">Hardware</a><a class="dropdown-item" href="https://2021.igem.org/Team:SUNY_Oneonta/Fluorimeter">Fluorimeter</a><a class="dropdown-item" href="https://2021.igem.org/Team:SUNY_Oneonta/Heat_Block">Heat Block</a></div></li><li class="nav-item dropdown"><a aria-expanded="false" aria-haspopup="true" class="nav-link dropdown-toggle" data-toggle="dropdown" href="#" id="navbarJudgingDropdown" role="button">Judging</a><div aria-labelledby="navbarJudgingDropdown" class="dropdown-menu"><a class="dropdown-item" href="https://2021.igem.org/Team:SUNY_Oneonta/Part_Collection">Parts</a><a class="dropdown-item" href="https://2021.igem.org/Team:SUNY_Oneonta/Implementation">Implementation</a><a class="dropdown-item" href="https://2021.igem.org/Team:SUNY_Oneonta/Engineering">Engineering</a><a class="dropdown-item" href="https://2021.igem.org/Team:SUNY_Oneonta/Contribution">Contributions</a><a class="dropdown-item" href="https://2021.igem.org/Team:SUNY_Oneonta/Judging">Medal Criteria</a></div></li><li class="nav-item dropdown"><a aria-expanded="false" aria-haspopup="true" class="nav-link dropdown-toggle" data-toggle="dropdown" href="#" id="navbarHuman PracticesDropdown" role="button">Human Practices</a><div aria-labelledby="navbarHuman PracticesDropdown" class="dropdown-menu"><a class="dropdown-item" href="https://2021.igem.org/Team:SUNY_Oneonta/Human_Practices">Engaging Stakeholders</a><a class="dropdown-item" href="https://2021.igem.org/Team:SUNY_Oneonta/Collaborations">Collaborations</a><a class="dropdown-item" href="https://2021.igem.org/Team:SUNY_Oneonta/Communication">Educational Outreach</a></div></li><li class="nav-item dropdown"><a aria-expanded="false" aria-haspopup="true" class="nav-link dropdown-toggle" data-toggle="dropdown" href="#" id="navbarTeamDropdown" role="button">Team</a><div aria-labelledby="navbarTeamDropdown" class="dropdown-menu"><a class="dropdown-item" href="https://2021.igem.org/Team:SUNY_Oneonta/Team">Team</a><a class="dropdown-item" href="https://2021.igem.org/Team:SUNY_Oneonta/Attributions">Attributions</a><a class="dropdown-item" href="https://2021.igem.org/Team:SUNY_Oneonta/Sponsors">Sponsors</a></div></li><li class="nav-item dropdown"><a aria-expanded="false" aria-haspopup="true" class="nav-link dropdown-toggle" data-toggle="dropdown" href="#" id="navbarLab NotebookDropdown" role="button">Lab Notebook</a><div aria-labelledby="navbarLab NotebookDropdown" class="dropdown-menu"><a class="dropdown-item" href="https://2021.igem.org/Team:SUNY_Oneonta/Protocols">Protocols</a><a class="dropdown-item" href="https://2021.igem.org/Team:SUNY_Oneonta/LabNotebooks">Daily Log</a><a class="dropdown-item" href="https://2021.igem.org/Team:SUNY_Oneonta/Safety">Safety</a></div></li></ul></div></div></nav><header class="d-flex justify-content-center align-items-center"><div class="container"><center><div class="image"><img alt="SUNY Oneonta iGEM Logo" src="https://static.igem.org/mediawiki/2021/8/86/T--SUNY_Oneonta--img--SNflaPs_Logo.png" style="width: 30%"/></div><p class="lead">SNflaPs (SNP Flappase)</p><hr class="my-4"/><p><the>2021 SUNY Oneonta iGEM Team’s project SNflaPs is an extension of Ca2LF, in which the goal was to develop a field deployable genetic testing system to detect the presence of the A2 allele of the beta casein (CSN2) gene. SNflaPs further explores the extent to which our method is effective in detecting single nucleotide polymorphisms (SNPs). Inspired by the needs of local farmers, the goal of this project is to demonstrate that a detection panel of SNP caused diseases is a feasible one. This is done by amplifying genomic DNA through recombinase polymerase amplification (RPA) and employing a 5’ flap endonuclease (Flappase) that cleaves Holliday junctions created by designed oligonucleotides with flurophore tagged ends.</the></p><a class="btn btn-primary btn-lg" href="https://2021.igem.org/Team:SUNY_Oneonta/Description" role="button">Read more</a></center></div></header><footer><div class="container"><p>Email: <a href="mailto:igem@oneonta.edu">iGEM@oneonta.edu</a> | <a href="https://suny.oneonta.edu/igem">suny.oneonta.edu/iGEM</a></p></div></footer><script src="https://2021.igem.org/Template:SUNY_Oneonta/index-bundleJS?action=raw&amp;ctype=text/javascript"></script></body></html>

Latest revision as of 03:34, 22 October 2021

SNflaPs

SUNY Oneonta iGEM Logo

SNflaPs (SNP Flappase)


2021 SUNY Oneonta iGEM Team’s project SNflaPs is an extension of Ca2LF, in which the goal was to develop a field deployable genetic testing system to detect the presence of the A2 allele of the beta casein (CSN2) gene. SNflaPs further explores the extent to which our method is effective in detecting single nucleotide polymorphisms (SNPs). Inspired by the needs of local farmers, the goal of this project is to demonstrate that a detection panel of SNP caused diseases is a feasible one. This is done by amplifying genomic DNA through recombinase polymerase amplification (RPA) and employing a 5’ flap endonuclease (Flappase) that cleaves Holliday junctions created by designed oligonucleotides with flurophore tagged ends.

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