Difference between revisions of "Team:UNILA LatAm/Contribution"

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<!-- # TODO: #6 Fix table caption font--><!-- # TODO: #7 Fix citations links font size--><html lang="en"><head><meta charset="utf-8"/><meta content="width=device-width,initial-scale=1" name="viewport"/><title>Contribution | iGEM UNILA_LatAm</title><script src="https://2020.igem.org/common/MathJax-2.5-latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script><link href="https://2021.igem.org/Template:UNILA_LatAm/css/contentCSS?action=raw&amp;ctype=text/css" rel="stylesheet"/></head><body><!-- # TODO: #6 Fix table caption font--><!-- # TODO: #7 Fix citations links font size--><nav class="navbar navbar-expand-xl fixed-top"><div class="container d-flex justify-content-between"><a class="navbar-brand d-lg-inline-block" href="https://2021.igem.org/Team:UNILA_LatAm"><img ;="" src="https://static.igem.org/mediawiki/2021/9/98/T--UNILA_LatAm--Logo.png" style="width:auto; height:100px ;position: relative !important; margin-top:15px; right: 300px"/></a><button aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation" class="navbar-toggler" data-target="#navbarNav" data-toggle="collapse" type="button"><span class="navbar-toggler-icon"></span></button><div class="collapse navbar-collapse" id="navbarNav"><ul class="navbar-nav ml-auto"><li class="nav-item dropdown"><a aria-expanded="false" aria-haspopup="true" class="nav-link dropdown-toggle" data-toggle="dropdown" href="#" id="navbarProjectDropdown" role="button">Project</a><div aria-labelledby="navbarProjectDropdown" class="dropdown-menu"><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Description">Description</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Design_Overview">Design Overview</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Background">Background</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Engineering">Engineering</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Contribution">Contribution</a></div></li><li class="nav-item dropdown"><a aria-expanded="false" aria-haspopup="true" class="nav-link dropdown-toggle" data-toggle="dropdown" href="#" id="navbarDryLabDropdown" role="button">DryLab</a><div aria-labelledby="navbarDryLabDropdown" class="dropdown-menu"><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Design">Design</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Model">Model</a></div></li><li class="nav-item dropdown"><a aria-expanded="false" aria-haspopup="true" class="nav-link dropdown-toggle" data-toggle="dropdown" href="#" id="navbarWetLabDropdown" role="button">WetLab</a><div aria-labelledby="navbarWetLabDropdown" class="dropdown-menu"><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Experiments">Experiments</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Results">Results</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Notebook">Notebook</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Protocols">Protocols</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Parts">Parts</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Safety">Safety</a></div></li><li class="nav-item dropdown"><a aria-expanded="false" aria-haspopup="true" class="nav-link dropdown-toggle" data-toggle="dropdown" href="#" id="navbarHuman PracticesDropdown" role="button">Human Practices</a><div aria-labelledby="navbarHuman PracticesDropdown" class="dropdown-menu"><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Human_Practices">Introduction</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Sustainability">Sustainability</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Implementation">Implementation</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Fighting_Underreporting">Fighting Underreporting</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Integrated_Human_Practices">Integrated Human Practices</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Education">Education</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Inclusivity">Inclusivity</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Communication">Communication</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Funding">Funding</a></div></li><li class="nav-item dropdown"><a aria-expanded="false" aria-haspopup="true" class="nav-link dropdown-toggle" data-toggle="dropdown" href="#" id="navbarTeamDropdown" role="button">Team</a><div aria-labelledby="navbarTeamDropdown" class="dropdown-menu"><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Team">Team Members</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Attributions">Attributions</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Collaborations">Collaborations</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Partnership">Partnership</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Sponsors">Sponsors</a></div></li><li class="nav-item dropdown"><a aria-expanded="false" aria-haspopup="true" class="nav-link dropdown-toggle" data-toggle="dropdown" href="#" id="navbarAwardsDropdown" role="button">Awards</a><div aria-labelledby="navbarAwardsDropdown" class="dropdown-menu"><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Medal_Criteria">Medal Criteria</a></div></li></ul></div></div></nav><header class="d-flex justify-content-center align-items-center"><div class="container"><h1>Contribution</h1><p class="lead pl-1"></p><hr class="my-4"/></div></header><main><div class="container"><div class="row"><div class="sidebar col-lg-3"><div class="nav" id="contents"><h5>Contents</h5><ul></ul></div></div><div class="content col-lg-9"><article><h1>Parts</h1><p>We added information to two parts in the registry:</p><p><a href="http://parts.igem.org/Part:BBa_K2486108">http://parts.igem.org/Part:BBa_K2486108</a>.<br/><a href="http://parts.igem.org/Part:BBa_K2577001">http://parts.igem.org/Part:BBa_K2577001</a>.</p><p>Both parts encodes Dermaseptins, a type of Antimicrobial Peptide (AMP) derived from frogs. We included information from the literature for use and biology of the parts.</p><h1>How to fund</h1><p>Funding is a challenge for all iGEM teams, but for teams from developing countries, it’s a a challenge even harder to complete. That is why the SynFronteras Team elaborated a report that can help teams who are struggling with this topic or may be a little lost on how to begin. You can find the document <a href="https://static.igem.org/mediawiki/2021/b/bd/T--UNILA_LatAM--How_to_fund.pdf">here</a>.</p><h1>Potential Cell Lysis Mechanisms for Bacillus subtilis Table</h1><p>In the partnership with team FCB-UANL, we created a table of potential cell lysis mechanisms for Bacillus subtilis. This table can be used by future teams that want to work with this chassis. You can access the table <a href="https://zenodo.org/record/5553126#.YXBAK-rMJH5">here</a>.</p><h1>Software</h1><p>We chose to work with a ToeHold RNA Switch in our project, but the available platforms for the design of the Toehold were not covering all the aspects necessary for us. That’s why we improved the x and y softwares to be able to z.</p></article></div></div></div></main><footer><div class="container" id="contfoot"><div id="div1"><br/><p>BioPank is a project developed by</p><p>the Syn Fronteras team</p><br/><br/><br/><p id="text1">Contact</p><p>synfronteras@gmail.com</p></div><div id="div2"><p id="fow">Follow us!</p><img height="30px" src="https://static.igem.org/mediawiki/2021/c/c9/T--UNILA_LatAM--fb.png" weight="30px"/><a href="https://www.facebook.com/synfronteras/">/synfronteras<br/></a><img height="30px" src="https://static.igem.org/mediawiki/2021/2/2c/T--UNILA_LatAM--ig.png" weight="30px"/><a href="https://www.instagram.com/igem_synfronteras/">@igem_synfronteras<br/></a><img height="30px" src="https://static.igem.org/mediawiki/2021/1/19/T--UNILA_LatAM--in.png" weight="30px"/><a href="https://br.linkedin.com/in/synfronteras-igem-team-77a7891ba">SynFronteras iGEM Team<br/></a><img height="30px" src="https://static.igem.org/mediawiki/2021/2/27/T--UNILA_LatAM--tw.png" weight="30px"/><a href="https://twitter.com/synfronteras">@synfronteras<br/></a><img height="30px" src="https://static.igem.org/mediawiki/2021/0/02/T--UNILA_LatAM--yt.png" weight="30px"/><a href="https://www.youtube.com/channel/UCHGAVNbPReEbzdEHeansZQg">SynFronteras-UNILA<br/></a></div></div></footer><script src="https://2021.igem.org/Template:UNILA_LatAm/content-bundleJS?action=raw&amp;ctype=text/javascript"></script></body></html>
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<!-- # TODO: #6 Fix table caption font--><!-- # TODO: #7 Fix citations links font size--><html lang="en"><head><meta charset="utf-8"/><meta content="width=device-width,initial-scale=1" name="viewport"/><title>Contribution | iGEM UNILA_LatAm</title><script src="https://2020.igem.org/common/MathJax-2.5-latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script><link href="https://2021.igem.org/Template:UNILA_LatAm/css/contentCSS?action=raw&amp;ctype=text/css" rel="stylesheet"/></head><body><!-- # TODO: #6 Fix table caption font--><!-- # TODO: #7 Fix citations links font size--><nav class="navbar navbar-expand-xl fixed-top"><div class="container d-flex justify-content-between"><a class="navbar-brand d-lg-inline-block" href="https://2021.igem.org/Team:UNILA_LatAm"><img ;="" src="https://static.igem.org/mediawiki/2021/9/98/T--UNILA_LatAm--Logo.png" style="width:auto; height:100px ;position: relative !important; margin-top:15px; right: 300px"/></a><button aria-controls="navbarNav" aria-expanded="false" aria-label="Toggle navigation" class="navbar-toggler" data-target="#navbarNav" data-toggle="collapse" type="button"><span class="navbar-toggler-icon"></span></button><div class="collapse navbar-collapse" id="navbarNav"><ul class="navbar-nav ml-auto"><li class="nav-item dropdown"><a aria-expanded="false" aria-haspopup="true" class="nav-link dropdown-toggle" data-toggle="dropdown" href="#" id="navbarProjectDropdown" role="button">Project</a><div aria-labelledby="navbarProjectDropdown" class="dropdown-menu"><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Description">Description</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Design_Overview">Design Overview</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Background">Background</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Engineering">Engineering</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Contribution">Contribution</a></div></li><li class="nav-item dropdown"><a aria-expanded="false" aria-haspopup="true" class="nav-link dropdown-toggle" data-toggle="dropdown" href="#" id="navbarDryLabDropdown" role="button">DryLab</a><div aria-labelledby="navbarDryLabDropdown" class="dropdown-menu"><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Design">Design</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Model">Model</a></div></li><li class="nav-item dropdown"><a aria-expanded="false" aria-haspopup="true" class="nav-link dropdown-toggle" data-toggle="dropdown" href="#" id="navbarWetLabDropdown" role="button">WetLab</a><div aria-labelledby="navbarWetLabDropdown" class="dropdown-menu"><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Experiments">Experiments</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Results">Results</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Notebook">Notebook</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Protocols">Protocols</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Parts">Parts</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Safety">Safety</a></div></li><li class="nav-item dropdown"><a aria-expanded="false" aria-haspopup="true" class="nav-link dropdown-toggle" data-toggle="dropdown" href="#" id="navbarHuman PracticesDropdown" role="button">Human Practices</a><div aria-labelledby="navbarHuman PracticesDropdown" class="dropdown-menu"><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Human_Practices">Introduction</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Sustainability">Sustainability</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Implementation">Implementation</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Fighting_Underreporting">Fighting Underreporting</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Integrated_Human_Practices">Integrated Human Practices</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Education">Education</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Inclusivity">Inclusivity</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Communication">Communication</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Funding">Funding</a></div></li><li class="nav-item dropdown"><a aria-expanded="false" aria-haspopup="true" class="nav-link dropdown-toggle" data-toggle="dropdown" href="#" id="navbarTeamDropdown" role="button">Team</a><div aria-labelledby="navbarTeamDropdown" class="dropdown-menu"><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Team">Team Members</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Attributions">Attributions</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Collaborations">Collaborations</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Partnership">Partnership</a><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Sponsors">Sponsors</a></div></li><li class="nav-item dropdown"><a aria-expanded="false" aria-haspopup="true" class="nav-link dropdown-toggle" data-toggle="dropdown" href="#" id="navbarAwardsDropdown" role="button">Awards</a><div aria-labelledby="navbarAwardsDropdown" class="dropdown-menu"><a class="dropdown-item" href="https://2021.igem.org/Team:UNILA_LatAm/Medal_Criteria">Medal Criteria</a></div></li></ul></div></div></nav><header class="d-flex justify-content-center align-items-center"><div class="container"><h1>Contribution</h1><p class="lead pl-1"></p><hr class="my-4"/></div></header><main><div class="container"><div class="row"><div class="sidebar col-lg-3"><div class="nav" id="contents"><h5>Contents</h5><ul></ul></div></div><div class="content col-lg-9"><article><h1>Parts</h1><p>We added information to two parts in the registry:</p><p><a href="http://parts.igem.org/Part:BBa_K2486108">http://parts.igem.org/Part:BBa_K2486108</a>.<br/><a href="http://parts.igem.org/Part:BBa_K2577001">http://parts.igem.org/Part:BBa_K2577001</a>.</p><p>Both parts encodes Dermaseptins, a type of Antimicrobial Peptide (AMP) derived from frogs. We included information from the literature for use and biology of the parts.</p><h1>How to fund</h1><p>Funding is a challenge for all iGEM teams, but for teams from developing countries, it's a challenge even harder to complete. That is why the SynFronteras Team elaborated a report that can help teams who are struggling with this topic or may be a little lost on how to begin. You can find the document <a href="https://static.igem.org/mediawiki/2021/b/bd/T--UNILA_LatAM--How_to_fund.pdf">here</a>.</p><h1>Potential Cell Lysis Mechanisms for <i>Bacillus subtilis</i> Table</h1><p>In the partnership with team FCB-UANL, we created a table of potential cell lysis mechanisms for <i>Bacillus subtilis</i>. This table can be used by future teams that want to work with this chassis. You can access the table <a href="https://zenodo.org/record/5553126#.YXBAK-rMJH5">here</a>.</p><h1>Software</h1><p>We built the Carpincho Toehold Designer, a Toehold switch generator for B. subtilis to detect the uptake of miRNAs from the extracellular environment. Although even growing number of design tools for these riboregulators, we use a combination of NUPACK and ViennaRNA packages to generate thermodynamic values, ensemble defects, pairing probability and images of the conformation of secondary structures. The code is open source and available for everyone who wants to work with NUPACK package for python.</p></article></div></div></div></main><footer><div class="container" id="contfoot"><div id="div1"><br/><p>BioPank is a project developed by</p><p>the Syn Fronteras team</p><br/><br/><br/><p id="text1">Contact</p><p>synfronteras@gmail.com</p></div><div id="div2"><p id="fow">Follow us!</p><img height="30px" src="https://static.igem.org/mediawiki/2021/c/c9/T--UNILA_LatAM--fb.png" weight="30px"/><a href="https://www.facebook.com/synfronteras/">/synfronteras<br/></a><img height="30px" src="https://static.igem.org/mediawiki/2021/2/2c/T--UNILA_LatAM--ig.png" weight="30px"/><a href="https://www.instagram.com/igem_synfronteras/">@igem_synfronteras<br/></a><img height="30px" src="https://static.igem.org/mediawiki/2021/1/19/T--UNILA_LatAM--in.png" weight="30px"/><a href="https://br.linkedin.com/in/synfronteras-igem-team-77a7891ba">SynFronteras iGEM Team<br/></a><img height="30px" src="https://static.igem.org/mediawiki/2021/2/27/T--UNILA_LatAM--tw.png" weight="30px"/><a href="https://twitter.com/synfronteras">@synfronteras<br/></a><img height="30px" src="https://static.igem.org/mediawiki/2021/0/02/T--UNILA_LatAM--yt.png" weight="30px"/><a href="https://www.youtube.com/channel/UCHGAVNbPReEbzdEHeansZQg">SynFronteras-UNILA<br/></a></div></div></footer><script src="https://2021.igem.org/Template:UNILA_LatAm/content-bundleJS?action=raw&amp;ctype=text/javascript"></script></body></html>

Revision as of 03:43, 22 October 2021

Contribution | iGEM UNILA_LatAm

Contribution

Parts

We added information to two parts in the registry:

http://parts.igem.org/Part:BBa_K2486108.
http://parts.igem.org/Part:BBa_K2577001.

Both parts encodes Dermaseptins, a type of Antimicrobial Peptide (AMP) derived from frogs. We included information from the literature for use and biology of the parts.

How to fund

Funding is a challenge for all iGEM teams, but for teams from developing countries, it's a challenge even harder to complete. That is why the SynFronteras Team elaborated a report that can help teams who are struggling with this topic or may be a little lost on how to begin. You can find the document here.

Potential Cell Lysis Mechanisms for Bacillus subtilis Table

In the partnership with team FCB-UANL, we created a table of potential cell lysis mechanisms for Bacillus subtilis. This table can be used by future teams that want to work with this chassis. You can access the table here.

Software

We built the Carpincho Toehold Designer, a Toehold switch generator for B. subtilis to detect the uptake of miRNAs from the extracellular environment. Although even growing number of design tools for these riboregulators, we use a combination of NUPACK and ViennaRNA packages to generate thermodynamic values, ensemble defects, pairing probability and images of the conformation of secondary structures. The code is open source and available for everyone who wants to work with NUPACK package for python.