Difference between revisions of "Team:CKWA-China/Description"

 
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                 <h1>Aside</h1>
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                 <h1>Description</h1>
 
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                     <li><a href="https://2021.igem.org/Team:CKWA-China">Home</a></li>
 
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                     <li>Description</li>
 
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                             <h2 class="point" id="point-1">Literature Review</h2>
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                             <h2 class="point" id="point-1">Description</h2>
                            <p>As we all know, potato (Solanum tuberosum) is a globally important high-yield crop that produces nutrient-rich tubers. This non-grain crop is the third most important food crop, after wheat and rice (Patil et al.2017). One of the major threats to potato production is soft rot disease caused by Erwinia bacteria, which generally occur during cultivation, harvesting or transportation and storage of farm produce, resulting in considerable yield reduction, poor quality of produce, and economic loss. In Kenya, it causes up to 50% total crop loss (Onkendi and Moleleki 2014; Muturi et al.2018).</p>
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<h3 class="point" id="point-11">1. A major problem in cancer.</h3>
                             <p>Different approaches to soft rot disease control have been developed and applied. The effectiveness of the phages in preventing infection of potato tubers by P. carotovorum was tested in laboratory experiments The management of potato diseases is based on a massive use of chemical pesticides, causing environmental pollution and ecological destruction. Although some researches about environmental-friendly pest management approaches have been reported, there are still many problems in effect and safety aspects.</p>
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Recurrence of cancer after treatment is a major problem facing humans today, and cancer recurrence is a great threat for cancer patients. Among them, overexpression of c-myc protein is closely related to this process, and patients with overactivation of c-myc gene in cancer cells tend to have poor prognosis.</p>
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<h3 class="point" id="point-2">1.1 What are myc genes?</h3>
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myc genes have been shown to be a class of regulatory genes that are transcription factors that can encode myc-like proteins to become transcription factors transcription factors. they are essential for cell growth, metabolism and tissue development.</p>
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<h3 class="point" id="point-12">1.2 Impact of myc in cancer</h3>
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                                        <p>We then recognized an absence in both detection and treatment of Soft Rot Disease. Therefore, we understood the importance of a bio-control solution that is not only effective but also environmentally-friendly. Based on knowledge of the field of synthetic biology, we started to come up with different approaches to soft rot detection and treatment.</p>
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They are essential for cell growth, metabolism and tissue development. Also, MYC is an important group of oncogenes. c-MYC is aberrantly expressed in about 30-50% of human malignancies and plays an extremely important role in affecting cell growth, proliferation, differentiation, apoptosis, as well as cell metabolism and malignant transformation. aberrantly high expression of c-MYC is associated with poor prognosis in many human cancers.
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<h3 class="point" id="point-13">1.3 C-myc genes</h3>
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The Myc family consists of three related human genes: </br>
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- c-myc (MYC), the first gene to be discovered in this family </br>
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- l-myc (MYCL) </br>
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- n-myc (MYCN) </br>
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                            <h3 class="point" id="point-2">Interview(Potato Center Asia-Pacific Headquarter)</h3>
 
                            <p>We met with senior staffs of the potato center Asia-Pacific Headquarter to learn about the current detection and treatments of potato diseases. We then visited their workplace, which accounted for a large proportion of the current potato-agricultural development. We presented our initial concept to the experts (including the chairman of the potato center, Mr. Lu) and audited a group meeting on agricultural pharmacology. Through the discussions with them, we became more aware of the consequences of Soft Rot disease and the importance of creating an effective bio-control solution.</p>
 
                           
 
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                            <h3 class="point" id="point-3">Experts</h3>
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<h3 class="point" id="point-2">2. New discoveries.</h3>
                            <p>Our team had the pleasure of meeting with Dr. Flemming Bensenbacher on 5th July 2019. Dr. Bensenbacer is an academician of the Royal Danish academy of Sciences and President of Carlsberg Foundation. He shared his journey in scientific research with us and the problems he encountered and tackled. We presented our project to him and hosted an interview with questions relating to the application of synthetic biology. This opportunity was crucial to us as we gained from it a valuable depth of knowledge in the potential future pathways of our product development.</p>
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                             <p>
                                <video style="width: 100%;" src="video/mda-kc21c5bv2fig3ieu.mp4" controls="“ture”"></video>
 
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Scientists have recently discovered that a Lon protease from bacteria can effectively degrade c-myc protein, and this may be one of the reasons why bladder cancer patients with urinary tract infection with this bacteria have a better prognosis instead. Thus, Lon protein is expected to be a new macromolecular drug in the fight against cancer in humans.</p>
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<h3 class="point" id="point-21">2.1 Discovery of c-myc protein inhibition</h3>
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MYC is important for the growth and development of the kidney. It has been shown that severe kidney infections impair kidney growth in childhood and that bladder cancer in patients with urinary tract infections instead has a better prognosis.
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Inference: MYC levels in the kidney may be disturbed by bacterial infections.
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<h3 class="point" id="point-22">2.2 Bacterial proteases deplete c-MYC and increase survival in mouse models of bladder and colon cancer</h3>
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Uropathogenic Escherichia coli (UPEC) can degrade c-MYC protein and attenuate MYC gene expression in human cells and animal tissues. Also, c-MYC protein can be degraded by cell-free Uropathogenic Escherichia coli (UPEC) lysates, as well as rapidly by purified Lon protease.
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<h3 class="point" id="point-2">2.3 Literature conclusions</h3>
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                                                <p>I could write some video notes here, a little bit more introduction.
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Lon protease from uropathogenic Escherichia coli (UPEC) is able to degrade c-MYC protein and attenuate MYC gene expression in human cells and animal tissues.
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Experiments in mouse models have shown that Lon protease delivered either intravesically or orally can delay tumor progression and improve survival in both MYC-dependent bladder and colon cancer models.
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                                                <p>I could write some video notes here, a little bit more introduction.
 
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<h3 class="point" id="point-3">3. Our solution</h3>
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                                                <p>I could write some video notes here, a little bit more introduction.
 
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We try to express Lon protease in various systems and test the yield of Lon protease in different environments. After achieving stable laboratory production, we will conduct in vitro cellular experiments to verify the inhibition ability of Lon protease on c-myc, and then we will try to optimize Lon protease from protein structure, find its effective gene fragment, adopt mRNA delivery system, and try to use it The next step will be to try to optimize Lon protease from protein structure, find its effective gene fragment, adopt mRNA delivery system, and try to use it as RNA targeting drug for drug optimization.
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            <h3 class="point" id="point-2">Ref</h3>         
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                      <p>Butler, D.S.C., Cafaro, C., Putze, J. et al. A bacterial protease depletes c-MYC and increases survival in mouse models of bladder and colon cancer. Nat Biotechnol 39, 754–764 (2021). https://doi.org/10.1038/s41587-020-00805-3</p>
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                                     <a href="#point-1">Literature Review</a>
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                                     <a href="#point-1">1. A major problem in cancer.</a>
 
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                                       <li><a href="">Literature Review</a></li>
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                                       <li><a href="#point-11">1.1 What are myc genes?</a></li>
                                       <li><a href="">Literature Review</a></li>
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                                       <li><a href="#point-12">1.2 Impact of myc in cancer</a></li>
                                       <li><a href="">Literature Review</a></li>
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                                       <li><a href="#point-13">1.3 C-myc genes</a></li>
                                       <li><a href="">Literature Review</a></li>
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                                   <a href="#point-2">Interview</a>
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                                   <a href="#point-2">2. New discoveries.</a>
 
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                                       <li><a href="">Interview</a></li>
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                                       <li><a href="#point-21">2.1 Discovery of c-myc protein inhibition</a></li>
                                       <li><a href="">Interview</a></li>
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                                       <li><a href="#point-22">2.2 Bacterial proteases deplete c-MYC</a></li>
                                       <li><a href="">Interview</a></li>
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                                       <li><a href="#point-23">2.3 Literature conclusions</a></li>
 
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                                   </ul>
 
                                 </li>
 
                                 </li>
                                 <li><a href="#point-3">Experts</a></li>
+
                                 <li><a href="#point-3">3. Our solution</a></li>
 
                             </ul>
 
                             </ul>
 
                         </div>
 
                         </div>

Latest revision as of 09:21, 20 October 2021

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